Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00236 ATGGCCTCAAGCAAACAAAAGGCTTGTGATTCATCTTGGAGTGCAAAGCAGAACAAGCTGTTTGAGAAGGCACTTGCAAAATATGACAAAGATACCCCTGACCGTTGGCAAAATGTAGCCAAAGCAGTTGGTGGTAAATCAGCAGAGGAAGTTAAGAGACACTATGAGTTACTCTTGGAAGATCTCAGACACATAGAGTCTGGTCATGTTCCCATTCCCAACTACAAATCCACAGGAACTGGCAATGTCTATGAAGAATGA 261 0.4291 MASSKQKACDSSWSAKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSAEEVKRHYELLLEDLRHIESGHVPIPNYKSTGTGNVYEE. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00236 86 ProSiteProfiles Myb-like domain profile. 5 59 IPR001005 -
Seca3g00236 86 ProSiteProfiles SANT domain profile. 10 63 IPR017884 -
Seca3g00236 86 Pfam Myb-like DNA-binding domain 11 56 IPR001005 -
Seca3g00236 86 Gene3D - 4 72 - -
Seca3g00236 86 SMART sant 9 61 IPR001005 -
Seca3g00236 86 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Seca3g00236 86 SUPERFAMILY Homeodomain-like 11 67 IPR009057 -
Seca3g00236 86 CDD SANT 12 59 IPR001005 -
Seca3g00236 86 FunFam Transcription factor SRM1 5 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00236 Seca-Chr3 3628378 3629901 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g00236 Myb_DNA-binding 3.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00236 - - gmx:100785292 150.984