Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00235 ATGTTGCACTGTCTCAACACTTCCGGGAATCTAGCTGGGAGCTGTTCCGACATGACAGTGTTGGAAAGACAAAGGGCAAGGATGAAGTGGCAACAAGAACAAGGCTACTTTTCTGGAAATGGGTTCAATGGTGTGTTCTCTTCTTCTTCTTCTCTGCATGTTCAGAATCAGAATTCTCAAGGGTCTATGATATTCTCTGCTGATTCTGGTTCTGCACTTGCTGAGGTAGTAGTGGCTGCTCACTCACACTCAATCAAACCTCTACCTGCTCCTGCTCCTGCTCCTGCCTTTGATGTGAATTCTGCAATTTCAAGGACTTTTAGCTGTCCACCTGTTCTGGCAGAGACGAAAGCCACTGACTCTTCAATTGGGAAAGAGAGTTTGAAGAAGAGAAAAGCTGATAAGGCCTATCAGAATCATCCTCCTAAGGTTGTTGCAGAAAGTGATAACAAAGATAAGAAGATCAAAGTCGGTGCTGAAGATGGGGAATCCAAAATCACAAAGAATAATACAACCACCACTAATAGCAATAACAGAGGAACTTGTGCAGATACTTCAAATTCAAAGGCTTCTGAGGTTCAAAAACCTGACTACATTCATGTTCGAGCAAGGCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACAGGAAAAGCTGGAATGCTTGATGAAATCATCAATTATGTTCAGTCCCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGGCTTGACTTCAATATTGATGATATGTTTAACAAAGGGGTGTTTCCTGCTTGTGATGCAACTTTTCAAGCCATGGGAATGTCTAACCCTTCAGAGATGACTAACCCTTCTTATCTTCAGTTCAATTCACCACAGCAAATTGTTTCATATGGTGGATTAGATACAGGGATGAACCCTTCAGATATGGGGCTTAGAAGGACCATAAGTGCCCCTGTATCTATTCCTGAAACATTTCTTGATTCTTCCTGTTTCTCTCAAATTCTACCCTCATCAACATGGGAAAATGATTTCCAAAACCTTTACGATTTGCCTTTTGATCAAGCACGAGCAACATCCTCCTTTCCCTCTCAGTCTCAGCTATTCACAGGCCTAGTGGATGCTAGCAATCTAAAGATGGAGATGTAG 1224 0.4191 MLHCLNTSGNLAGSCSDMTVLERQRARMKWQQEQGYFSGNGFNGVFSSSSSLHVQNQNSQGSMIFSADSGSALAEVVVAAHSHSIKPLPAPAPAPAFDVNSAISRTFSCPPVLAETKATDSSIGKESLKKRKADKAYQNHPPKVVAESDNKDKKIKVGAEDGESKITKNNTTTTNSNNRGTCADTSNSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDMFNKGVFPACDATFQAMGMSNPSEMTNPSYLQFNSPQQIVSYGGLDTGMNPSDMGLRRTISAPVSIPETFLDSSCFSQILPSSTWENDFQNLYDLPFDQARATSSFPSQSQLFTGLVDASNLKMEM. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00235 407 MobiDBLite consensus disorder prediction 143 192 - -
Seca3g00235 407 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 98 305 IPR024097 GO:0006355
Seca3g00235 407 MobiDBLite consensus disorder prediction 145 163 - -
Seca3g00235 407 MobiDBLite consensus disorder prediction 122 138 - -
Seca3g00235 407 MobiDBLite consensus disorder prediction 164 192 - -
Seca3g00235 407 CDD bHLH_AtBPE_like 197 282 - -
Seca3g00235 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Seca3g00235 407 FunFam Basic helix-loop-helix transcription factor 204 276 - -
Seca3g00235 407 SMART finulus 213 263 IPR011598 GO:0046983
Seca3g00235 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Seca3g00235 407 MobiDBLite consensus disorder prediction 119 138 - -
Seca3g00235 407 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Seca3g00235 407 Gene3D - 204 278 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00235 Seca-Chr3 3591528 3594276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00235 9 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 37.984 2.84e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g00235 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00235 - - gmx:100798855 502.671