Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00212 ATGGCGCCGAAGCAGAGCACAAGGAAGGTTAGCAGAAACCCTGAATTGATAAGGGGAATCAGAAAGTACTCGAGGTCCCAGATGTACCACAAGAGGGGCATCTGGGCTATCAAGGCAAAAAACGGCGGCGTTTTACCTCGCCACGATCCCAAACCTAAACCTCAAGCTCCTGCTCAGAAACCACCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTCATCAACAAGCACAAGCCAAAACCCACTAAGCTCAGGGCTAGCATTACTCCCGGAACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGGGTAGTTTTTTTGAAGCAGCTTCCTTCTGGTTTGCTTCTTGTAACTGTTCTTACTTATTTCTGCTGTGTCTTATGTCTCTTTCTTGCCAATTCAGGTCCTTTTAAGATTAATGGAGTTCCTTTGAAACGCGTGAACCAGTCCTATGTGATTGGCACCTCAACCAAAGTGGATGTCTCTGCTGTTAATGTGGATAAATTTGATGACAAGTACTTTGCAAAGGAAGCCCAGGAAAAGAAGAAGAAGGGAGAAGGAGAGTTCTTTGAGGCTGAGAAGGAGGAGAAAAATGTGTTGCCCCAGGAGAAGAAAGATGACCAGAAAACTGTCGACTCTGCATTGGTAAAGGCCATTGAGAGTGTTCCAGACTTGAAGGCTTATCTGGGTGCCAGGTTTTCTCTTAAGGCAGGCATGAAGCCCCACGAGCTAGTCTTCTAG 750 0.4613 MAPKQSTRKVSRNPELIRGIRKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPQAPAQKPPKFYPADDVKKPLINKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTVLTYFCCVLCLFLANSGPFKINGVPLKRVNQSYVIGTSTKVDVSAVNVDKFDDKYFAKEAQEKKKKGEGEFFEAEKEEKNVLPQEKKDDQKTVDSALVKAIESVPDLKAYLGARFSLKAGMKPHELVF. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00212 249 CDD KOW_RPL6 81 249 IPR041997 -
Seca3g00212 249 PANTHER 60S RIBOSOMAL PROTEIN L6 137 249 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca3g00212 249 Coils Coil 178 198 - -
Seca3g00212 249 MobiDBLite consensus disorder prediction 42 84 - -
Seca3g00212 249 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Seca3g00212 249 Pfam Ribosomal protein L6e 142 249 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca3g00212 249 SUPERFAMILY Translation proteins SH3-like domain 87 189 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00212 Seca-Chr3 3246796 3248225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00212 1 249 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 75.100 2.54e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00212 K02934 - gmx:100499766 380.178