Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00210 ATGGAAGGGAACTCACCTGCAGAAGAAGAATACCAACGAAGACGTTGTAAATGGTGCGACTACGACAAGGTTGTGGATGAAAGGGGCGGCGACGAGGTTTTGGACGGTGTGGTGAATCCCCACGACATTGGAATGACAAAGGACGAGTCTCACTTCACCACTTTGAGATTGGGAGGAAGACTCAAGACCGAAGAACTTAATGAAAAAATAACATGTGCTCGCCAAGGACACAACAAATCAACCGTGAAGAACTCTTTCAAAAGTGTGTCATCAATCAAAGTTGATTGTGGAGCACATGTTAGTGCTTGCTTGAAGTCTGATGGGTTGTATTACATAACCAAGGTCAATGTTCATCATTCTCATGATCTGAATCCAAGCAAAGCAAGATTGTTCAAGTCAAACAAAGAGATGAGCATGCATGTAAGGAGAGTCTTGGATGTCAATGATAGGGCAGGGGTGAGATTGAACAAAAGCTTTAATTCCATTGTTACAGATGTGGGGGGCTATGAAAATTTGCCTTGTATTGAGAGAGATGTGAGGAATTATATTATAAAGGAAAGGCGAGCAATTGGCAAAGGGGGTGATGGTGAGGCTCTCAAGTTGTATTTTGCTAGGATGCAAGAGCAAAATAGTGACTTTTTCTATGACATTGATTTGGATAATGATTTTCATATTAGAAATGTGTTTTGGGCAGATGCAAGAAGTAGGGCAGCATATGTGTCATTTGGTGATGTGATTACATTTGATACAACTTATCTTACAAATAAGTATGATATGCCATTTGCTGCATTTGTTGGGGTTAATCATCATGGCCAATCGGTACTACTTGGATGTGGGTTGCTATCTAGTGAAGACACTGCAGGATTTGTGTGGCTATTTAGATCATGGTTAAGGTGCATGTCAGGCATTCCTCCCCAAGCAATCATAACTGATCAATGTTATGCTATGAAAAATGCAATTGAGATAGTGTTTCCCAGTACACATCATAGATGGGCAGAAAAGGAGTTCCAAGCTGATTTTCAATCTTTAAATAGCACGGTGTCTTCTAATACAAAGTCTCCAATTGAAAGACAATTTCAAGAAAATTATACTCATAAAAAATTCAAAGAGGTCCAAGCCGAGTTCAGGGCTACAACTGATTGTCATGCATCATTAACACTACAAGAAGGTTGTGTCTGCACTTACAATGTAGTGGAGGACATGGTTTTTGGGGATAAACCTAAAGAAGTTGACTTTATTGTGGTGTTTAATAGAGAAAACCATGATATCAAGTGTAAATGCTTGTTATTTGAATTTCGAGGCATCATGTGTAGGCATTCTCTTGTTGTGCTTGGTATAGAAAGGGTGAAAGAAGTGCCTTCCAAGTATGTTTTATCGAGGTGGAGCAAGAACATGAAAAGAAGACACACATATATTAAGAGTAGCTATGATGTTAAGCAATTAAAGCCTCAAATGAAAAGATTTGATGAATTATGTAAGAACTTTTATGAAGTTGGTGAAGTCGCTGCAGAACCTGTTCAAATTTCCCTTACTTGA 1536 0.39 MEGNSPAEEEYQRRRCKWCDYDKVVDERGGDEVLDGVVNPHDIGMTKDESHFTTLRLGGRLKTEELNEKITCARQGHNKSTVKNSFKSVSSIKVDCGAHVSACLKSDGLYYITKVNVHHSHDLNPSKARLFKSNKEMSMHVRRVLDVNDRAGVRLNKSFNSIVTDVGGYENLPCIERDVRNYIIKERRAIGKGGDGEALKLYFARMQEQNSDFFYDIDLDNDFHIRNVFWADARSRAAYVSFGDVITFDTTYLTNKYDMPFAAFVGVNHHGQSVLLGCGLLSSEDTAGFVWLFRSWLRCMSGIPPQAIITDQCYAMKNAIEIVFPSTHHRWAEKEFQADFQSLNSTVSSNTKSPIERQFQENYTHKKFKEVQAEFRATTDCHASLTLQEGCVCTYNVVEDMVFGDKPKEVDFIVVFNRENHDIKCKCLLFEFRGIMCRHSLVVLGIERVKEVPSKYVLSRWSKNMKRRHTYIKSSYDVKQLKPQMKRFDELCKNFYEVGEVAAEPVQISLT. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00210 511 ProSiteProfiles Zinc finger SWIM-type profile. 412 448 IPR007527 GO:0008270
Seca3g00210 511 SMART 26again6 423 450 IPR006564 GO:0008270
Seca3g00210 511 PANTHER OS01G0519700 PROTEIN 332 493 - -
Seca3g00210 511 Pfam MULE transposase domain 245 331 IPR018289 -
Seca3g00210 511 Pfam FAR1 DNA-binding domain 65 125 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00210 Seca-Chr3 3221300 3227526 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g00210 MULE 4.7e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00210 - - psat:127136936 491.115