Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00187 ATGGGAGAGGCAGCGCGCGGTGGTTGCTGTCCGCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTTGTTCAGCTCATCATTCCCATCGAATCCGCTCATCTTACCGTCTCTTACCTCGGCGACCTTGGTCTCCTTCAATTCAAAGATCTCAATGTAGAAAAGAGTCCGTTTCAACGAACTTATGCGACTCAGATAAAAAGATGTGGAGAGATGGCTCGTAAATTGCGTTTTTTCAAGGAGCAAATGTTGAAGGCCGGTGTTTCACCAATAGGTTCCACAACGCAGGTTGATGCAAACATTGATGACCTTGAGGTAAAACTTACAGAACTTGAATCGGAGTTAACTGAGATGAATGCAAACAATGAAAAGTTGCAACGCTCTTACAATGAACTAGTGGAATATAAGCTTGTTCTACAGAAGGAATTGCTCACCGATTCATCGAAGCAAGTCAAGTTGGGATTTTTAGCAGGTCTTATTCCCAGGGAAAAGTCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAACGTGTTTTTGAGGCAGGCCATTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGGTTGAGAAAAATGTGTTTGTGGTCTTCTATGCTGGTGAAAAAGCAAAAGCTAAGATTCTGAAAATATGTGAGGCATTTGGTGCTGATCGTTACCCTTTTGCTGAGGAACTAGGAAAACAATCTCAAATGATTTCAGAGGTTTGCTATATGATTCTTACTTCTCATAGGGAAAAGCTTAAGTACTTCCCTCCCCCCCTCCAATTTTGTTGA 807 0.4312 MGEAARGGCCPPMDLFRSEPMQLVQLIIPIESAHLTVSYLGDLGLLQFKDLNVEKSPFQRTYATQIKRCGEMARKLRFFKEQMLKAGVSPIGSTTQVDANIDDLEVKLTELESELTEMNANNEKLQRSYNELVEYKLVLQKELLTDSSKQVKLGFLAGLIPREKSMAFERILFRATRGNVFLRQAIVEDPVTDPVSGEKVEKNVFVVFYAGEKAKAKILKICEAFGADRYPFAEELGKQSQMISEVCYMILTSHREKLKYFPPPLQFC. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00187 268 PANTHER VACUOLAR PROTON ATPASES 15 246 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca3g00187 268 Pfam V-type ATPase 116kDa subunit family 148 247 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca3g00187 268 Pfam V-type ATPase 116kDa subunit family 39 141 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca3g00187 268 Coils Coil 94 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00187 Seca-Chr3 2855029 2858272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00187 13 247 Primary Pumps ATPases(2) AT4G39080 66.176 8.52e-119 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00187 K02154 - gmx:100810062 422.935