Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00186 ATGATCTTAGGCAAACGATGGACAACCCCATCTCTGCGTTTTATTTATGGGAGATATGACATTTACATATTAACCGTGTTGTCAAAGTTAGGCAGTCTTCCAGGTTTTTTCTATGATTTGAAAATCATATCCTTGAAACAGCCATCACTCCCGAGTGGGCAAGAGATGATTGGCTCAATTTCAAGGTTTTCTGAAATCTCATCCTTAACCATGAGACCTAGAGTGAGGAAGGAGAAATCCATTTACCATACTCTGAACATGCTTAGCCTTGATGTGACCAAAAAATGTCTAGTGGCTGAGGGTTGGAGTCCTGTTTTCGCAACAAAGATGATTCAGGATGCATTGCAGAGGGCAGAACTTGAATCTAACTCCCAAGTCAGTGCCATTTTCCAGATTTTGCATACTAGGGAGATGCCACCTACCTATTTTCGCACAAACAAATTTACTTATGCATTTCAAGAAATTGTTGATTCATATGGGGTTGCTAAGTATCGGGAGGCAAATCCTACTGTATATACCATAATTACCTTTCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGACATGGAATATGTTTACTACTGGGAGCACTTTTTTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAACTTGGAGACATCACAGAGATGACTTTTGGAGGTCGTTATGTTATTTTGTTGATGGCCCTCTTCTCAATATTCACTGGTTTGATCTATAATGAGTTCTTTTCTGTTCCATTTGAACTCTTTGCTCCTTCAGCATATGCATGTCGTGACCTTTCTTGCAGGGATGCTACTACTGTTGGCCTGATAAAAGTGCGTCAAACTTACCCATTTGGAGTGGACCCTGTATGGCATGGAACACGAAGTGAATTACCATTTCTAAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGGGTTGCCCAAATGAACCTTGGAATTATAATGAGCTTTTGCAATGCCACTTTCTTTGGAAATGGCTTAAATATATGGTTCCAATTTATTCCTGAGATTATATTTCTCAACAGTCTGTTTGGTTACCTATCCGCTCTCATTGTTGTGAAGTGGTGCACTGGTTCTCAAGCTGATTTGTACCATGTAATGATCTACATGTTCCTGAGCCCTACAGATGATTTGGGTGAAAACCAACTCTTTGTTGGTCAGAAAATTCTTCAGCTTGTGCTTTTACTTCTGGCCGTTGTCTCTGTACCCTGGATGCTGATCCCAAAACCATTTATTTTGAAGAAGCAACATGAAAATAGGCACCAGGGTGAATCTTATACACCACTTCAAAGCACAGAGGAAAGTTTGCAAGTGGAGTTAAATCATGATTCCCATGGTCATGCGGAATTTGAGTTCAGTGAAGTCTTTGTGCATCAACTCATACACACCATAGAATTTGTACTTGGAGCAGTCTCTAATACAGCTTCTTATCTTCGTCTATGGGCTCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTATTCTACGAGAAGGTTCTCATTATGGCATGGGGGTACAACAATGTGATTATCCTGATAGTGGGTTTCATTATCTTCGTTTTTGCTACCGTTGGAGTGTTACTTGTCATGGAAACTTTAAGTGCCTTCTTGCATGCTCTACGACTTCACTGGGTGGAGTACCAAAATAAGTTCTATGAGGGTGATGGTTACAAGTTCCACCCTTTCACCTTTTCATTGCTTGATGATGAGGATGACTGA 1728 0.4005 MILGKRWTTPSLRFIYGRYDIYILTVLSKLGSLPGFFYDLKIISLKQPSLPSGQEMIGSISRFSEISSLTMRPRVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFATKMIQDALQRAELESNSQVSAIFQILHTREMPPTYFRTNKFTYAFQEIVDSYGVAKYREANPTVYTIITFPFLFAVMFGDWGHGICLLLGALFFIIREKKLSSQKLGDITEMTFGGRYVILLMALFSIFTGLIYNEFFSVPFELFAPSAYACRDLSCRDATTVGLIKVRQTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSFCNATFFGNGLNIWFQFIPEIIFLNSLFGYLSALIVVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKILQLVLLLLAVVSVPWMLIPKPFILKKQHENRHQGESYTPLQSTEESLQVELNHDSHGHAEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLIMAWGYNNVIILIVGFIIFVFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFHPFTFSLLDDEDD. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00186 575 Pfam V-type ATPase 116kDa subunit family 71 567 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca3g00186 575 PANTHER VACUOLAR PROTON ATPASES 74 572 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00186 Seca-Chr3 2849101 2854945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00186 74 575 Primary Pumps ATPases(2) AT2G21410 80.876 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00186 K02154 - gmx:100810062 884.404