Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00184 ATGGCTAAACCGAAAGCTTCTTCGAAGCGAACCCTAGAATCGTACACGGTCAAACACATAAACAAAACCATTAGAGCTGGCGATTGTGTGCTTATGCGGCCCTCTGATCCATCGAAACCGTCGTATGTGGCTAGGGTTGAGCGGATCGAAGCCGATTCCCGTGGTGCGAACGTGAAGGTTAACGTTCGTTGGTACTATCGGCCTGAAGAGTCAATCGGCGGCCGCCGTCAGTTCCATGGCTCCAAGGAGGTTTTTCTCTCCGATCACTTCGATTCTCAGAGGGCCGACACCATCGAGGCCAAGTGTATGGTCCACAGCTTCAAAAGCTACACAAAACTCGATGCGGTTGGAAATGAGGATTTCTTCTGTCGTTTCGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGACAGAGTTGCTGTGTACTGTAAATGTGAGATGCCCTACAACCCAGATGACCTAATGGTTCAGTGTGAGGGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTACTGTGAAGGTTGTTCTGCTATAGATCAAAAGAAGTTGCAAAATTCTCATTCTGCTACAAGACTCTCGGATACAAAGGTATTTCTAATTACTGTTGTTTGA 651 0.4747 MAKPKASSKRTLESYTVKHINKTIRAGDCVLMRPSDPSKPSYVARVERIEADSRGANVKVNVRWYYRPEESIGGRRQFHGSKEVFLSDHFDSQRADTIEAKCMVHSFKSYTKLDAVGNEDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFYCEGCSAIDQKKLQNSHSATRLSDTKVFLITVV. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00184 216 ProSiteProfiles Zinc finger PHD-type profile. 140 191 IPR019787 -
Seca3g00184 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 135 205 - -
Seca3g00184 216 ProSiteProfiles BAH domain profile. 22 138 IPR001025 GO:0003682
Seca3g00184 216 SMART BAH_4 22 138 IPR001025 GO:0003682
Seca3g00184 216 SMART PHD_3 142 189 IPR001965 -
Seca3g00184 216 SUPERFAMILY FYVE/PHD zinc finger 131 194 IPR011011 -
Seca3g00184 216 ProSitePatterns Zinc finger PHD-type signature. 143 188 IPR019786 -
Seca3g00184 216 Pfam BAH domain 23 137 IPR001025 GO:0003682
Seca3g00184 216 Pfam PHD-finger 142 189 IPR019787 -
Seca3g00184 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 204 IPR013083 -
Seca3g00184 216 Gene3D - 1 136 IPR043151 -
Seca3g00184 216 PANTHER OS08G0421900 PROTEIN 3 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00184 Seca-Chr3 2827858 2831476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00184 42 140 Core DNA Replication Machinery Family AT4G14700 28.283 3.52e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g00184 BAH 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00184 K25868 - gmx:100787968 402.905