Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00183 ATGGCAACTTATTACACAAGTTCAAGTAATCAAAGAGATGCTGTGCCAATGCTCTGTCTTAGGGAGCCTTTGCCAAATTCATATCCTGAGACACCAATTCTTCCCAGCAATATAACATTATATATGAGCTCTGGTTCATACTCAGAAGCATTGTCTGGTAATTCTCAGCAGCAAAATAATTGCTTTGTGATTCCATCAATAGGTGCTTCACATTCCACTTCTGAACAGCAAGAAATATTAGCAAATATGGGTGAGTTCCAAACTGGGGTTCATGATTTCAGTACATGGAGGGAGGGTAGAAATGAGATGTTAGTCAGACAACCTATGGATGGACAGAACTTGCAAGGTCATGGATTATCCCTCAGCCTTGGAACCCAAATACCCTCAGGAATCCAAATGCCTCCTATCCATGATAGGAATGATGATTCAAGTTTTGATTCGTTTTTGGGTGCTAATCCATCAATTTCAGGCAATGGGGCCTATAAAAGTGGCACATCTAGGGATGAAGATAGGAGACATTCTGAAAATTTTACATCTGGGATATCTGAAGCTAGTCAAGATTTGAACAGAGGAGATTTTTCATTGCATGGAATGTCGAGTGTTGTAAGAACAGTTCCTAATACCAAATACCTCAATGCAGCACAGCAACTGCTTGATGAAGTTGTCGACATCCGGAAAGCTACTAAAAAACCTGTTATGAAAAGTCAGAGCACACATGAGGACTCTAAAAAAAATGCCAAGGAGGATGATGAACAACTAGAAAATCAAAGGCCTTCTGCAAATGGATTGCCTAATTCTCAAGGTTCAGCTAGTAACTCCTCTTGTGAGCTTTCACATGCAGAAAAGCAAGATCTGCACAACAAGTTATCAAAGCTTTTGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTATCATCAGATGCAAATTGTTGTGTCATCATTTGATGTGATAGCAGGACATGGGGCTGCTAAACCATATACAGCACTTGCTCTTCAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATGCAATTACTGGGCAAATCAGTACAACACAAAAAAGCCTTGGAGAGCAAGACGCTTCTGGAAATAATAAAGGAGTTGGAATTTCAAGACTTAGATATGTGGACCAACAAATCCGGCAACAGAGGGCTCTTCAGCAGCTCAGCATGACACAACATGCATGGAGGCCACAAAGGGGACTTCCAGAAAGCTCTGTTTCAATTCTCCGTGCTTGGCTGTTTGAGAATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTGGCAAAACAGACAGGCTTGACTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGTGTGCGTCTATGGAAACCTATGATTGAGGAGATGTACAAGCAAGAGTTTTGTGATGCAGACATGGACTCAAGTTCTACTTCTGAGAGTGCATCCAAGTTAACAAAAAGTGATGTCAAGACCTCCAATGATATGGGTGATGAATCTCAGCTCTGCCAAAGTTCAATGGCCAATAACAATTACGATGGACAAATTAAAGACCTCAGATCTGATCAAGTTCTTGATACAGAAATCATGGCGTCTACTGGATTAGCTAGTATCCAAAATGGAGATCATGAGGCCGAAACTGAACATAGGTTAGTAAAGCAGACTGAGGAGCAAAGGCCAAACTTCGATGATTGCGGTCTCTTCCCACATGACACAGTTGTTGAGTCTGATGGAGCTAATGACAGGTTTATGTCAGTTGATCCAACATGCCAAATGTCAGAGTTTGGGAACTTCAAGTCAAGAAGTGGAGTGTCTCTAACATTAGGTTTGCAGCATTATCAAGGAGGTAATTTTTTGCCTGGTGAGACCCATCTTGGTTTGGTTTCCATGAGGGAGGATGGCATCTACAGTGCTAATGCAGCTTCTAACATAGAAGCTGAGACAGCAGAACTTGAGTGCATCAGTGCTGGAAACCAGCAACAAAGGTTCAGTTCACCTCATATGTTGCATGATTTTGTAGTATGA 2028 0.4132 MATYYTSSSNQRDAVPMLCLREPLPNSYPETPILPSNITLYMSSGSYSEALSGNSQQQNNCFVIPSIGASHSTSEQQEILANMGEFQTGVHDFSTWREGRNEMLVRQPMDGQNLQGHGLSLSLGTQIPSGIQMPPIHDRNDDSSFDSFLGANPSISGNGAYKSGTSRDEDRRHSENFTSGISEASQDLNRGDFSLHGMSSVVRTVPNTKYLNAAQQLLDEVVDIRKATKKPVMKSQSTHEDSKKNAKEDDEQLENQRPSANGLPNSQGSASNSSCELSHAEKQDLHNKLSKLLSMLDEVDSRYKQYYHQMQIVVSSFDVIAGHGAAKPYTALALQTISCHFRCLRDAITGQISTTQKSLGEQDASGNNKGVGISRLRYVDQQIRQQRALQQLSMTQHAWRPQRGLPESSVSILRAWLFENFLHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVRLWKPMIEEMYKQEFCDADMDSSSTSESASKLTKSDVKTSNDMGDESQLCQSSMANNNYDGQIKDLRSDQVLDTEIMASTGLASIQNGDHEAETEHRLVKQTEEQRPNFDDCGLFPHDTVVESDGANDRFMSVDPTCQMSEFGNFKSRSGVSLTLGLQHYQGGNFLPGETHLGLVSMREDGIYSANAASNIEAETAELECISAGNQQQRFSSPHMLHDFVV. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00183 675 Gene3D - 393 472 - -
Seca3g00183 675 SMART prehox3 199 350 IPR006563 -
Seca3g00183 675 MobiDBLite consensus disorder prediction 145 163 - -
Seca3g00183 675 CDD homeodomain 399 460 IPR001356 GO:0003677
Seca3g00183 675 MobiDBLite consensus disorder prediction 229 255 - -
Seca3g00183 675 FunFam BEL1-like homeodomain protein 9 402 464 - -
Seca3g00183 675 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Seca3g00183 675 SMART HOX_1 399 463 IPR001356 GO:0003677
Seca3g00183 675 Pfam Associated with HOX 205 349 IPR006563 -
Seca3g00183 675 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Seca3g00183 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 483 - -
Seca3g00183 675 Coils Coil 236 256 - -
Seca3g00183 675 MobiDBLite consensus disorder prediction 474 501 - -
Seca3g00183 675 SUPERFAMILY Homeodomain-like 400 466 IPR009057 -
Seca3g00183 675 MobiDBLite consensus disorder prediction 134 189 - -
Seca3g00183 675 MobiDBLite consensus disorder prediction 229 281 - -
Seca3g00183 675 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00183 Seca-Chr3 2812123 2817518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00183 27 488 Homeobox Transcription Factor Family AT4G34610 47.083 5.92e-124 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g00183 POX 1.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00183 - - gmx:100801522 1003.43