Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00171 ATGCCAAATAGGATGGAATTAGGAGAAGAAGAAGTGGTAAAGGGTTCAAAGTGCCAAGACTGTGGGAACCAAGCCAAGAGGGAATGTTCATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGTTTTGAGTGCCAAACCCATATCAAGAGCACTTGGATTCCTGTCGATAAGAGGCGCCAGATCATCAGAGATCAGGAACAACAACCTAATCCACACCAGTACTTTCTCACAGATATCCCTAAAAAGCACAACCATAATCCATATTCAGGTTTAGAGGAGTTAAAATTTCCAGCTGCTATGAATTCCATGGCTATATTTCGGTGTGTTGAGGTTCGTTCTATGGATGATACAGTGAATGAAATAGCGTATCAAACATGTGTGAACATTGGAGGACATGTATTTAGTGGAATTCTCTATGATCAAGGCCCTGATCATCACACCTTGAATATTGCAAGGCCAGGTGGTGACAGTTCCACAACCACAGGACTTGTTGATCATCAGCAGCAGAGTCTCAGTCGTATGAATAATGCTTCAAACCTCCACAGTACTCGAGATGGTGCAACTATGGTTATGGCCCCATTATCAGCTCATCATGATCACCATTTTCTACCTCCATCACCCTTTCCCTTTCCCTTTGCTCCCACCAGACCCGGTATGCCATATTTCTCACATCCAAAATCTTAG 687 0.4338 MPNRMELGEEEVVKGSKCQDCGNQAKRECSYSRCRTCCKNKGFECQTHIKSTWIPVDKRRQIIRDQEQQPNPHQYFLTDIPKKHNHNPYSGLEELKFPAAMNSMAIFRCVEVRSMDDTVNEIAYQTCVNIGGHVFSGILYDQGPDHHTLNIARPGGDSSTTTGLVDHQQQSLSRMNNASNLHSTRDGATMVMAPLSAHHDHHFLPPSPFPFPFAPTRPGMPYFSHPKS. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00171 228 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 206 IPR007818 GO:0003700|GO:0006355
Seca3g00171 228 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Seca3g00171 228 Pfam Domain of unknown function (DUF702) 15 145 - -
Seca3g00171 228 NCBIfam LRP1 C-terminal domain 96 144 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00171 Seca-Chr3 2704841 2706069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00171 18 141 C2H2 Transcription Factor Family AT3G51060 50.355 1.74e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca3g00171 DUF702 1.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00171 - - pvu:PHAVU_009G004300g 257.299