Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00170 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTAGAGGCCTCTGTGTTCTGTCCTGCAGATGAAGCAGCTCTTTGCCATAACTGTGATCGTACCATCCACCATGCCAACAAGCTGGCAAGCAAACACTCGCGCTTCACTCTCCACCACCCAACCTCCAAAGACTCCCCCCTTTGTGATATCTGCCAAGAGAGGCGTGCATATCTATTTTGTCAAGAAGACAGAGCAATTCTTTGCATAGAATGTGACCTTTCTATCCACAGAGCAAATGAACATACCCAGAAACATAACAGGTTTCTTCTCACCGGTTTGAAGCTCTCTAACACTTGTTTAGACCCAGATTCATCATCCACCAATGGTCCTAATAGAGTCACTGCCTCTAGATCCAAAGCAAACAGACCCAGATCAGTTTCAAATGAAAATCAAAGTTCTTCTTGCAAGGTTGAAGACAATATGGCTAGTGACACTGGTTCTGTTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACAATACCTGGCTACTGTTTTGAAGACTTTCTTGATGCTTCTTTTGCACCTAATGGTTTCTGTAAGAATTATGATTATCATTCGGAATTTCAGAACCAAGATCTTGAAGTTAGCACGTGTTTATTTCCGATTAGCCCTTCGAGTCTTCCTCAGATTAGTTCTTCTGTGGTTAGAGTTAAGGAAATTCCAAAAGCGAACATTGTCAAAGGGAACTCAAAACGCTGTACAGTTCCTGAAACTAGTCCTTCATTCATCAAAATATCTAGACGCTCTCGATAA 786 0.416 MKIQCDVCDKVEASVFCPADEAALCHNCDRTIHHANKLASKHSRFTLHHPTSKDSPLCDICQERRAYLFCQEDRAILCIECDLSIHRANEHTQKHNRFLLTGLKLSNTCLDPDSSSTNGPNRVTASRSKANRPRSVSNENQSSSCKVEDNMASDTGSVSTSSISEYLIETIPGYCFEDFLDASFAPNGFCKNYDYHSEFQNQDLEVSTCLFPISPSSLPQISSSVVRVKEIPKANIVKGNSKRCTVPETSPSFIKISRRSR. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00170 261 Gene3D Classic Zinc Finger 1 98 - -
Seca3g00170 261 SMART bboxneu5 53 100 IPR000315 GO:0008270
Seca3g00170 261 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca3g00170 261 CDD Bbox1_BBX-like 5 47 - -
Seca3g00170 261 MobiDBLite consensus disorder prediction 111 158 - -
Seca3g00170 261 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g00170 261 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Seca3g00170 261 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Seca3g00170 261 CDD Bbox1_BBX-like 57 100 - -
Seca3g00170 261 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 225 - -
Seca3g00170 261 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00170 Seca-Chr3 2650392 2652276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00170 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.241 7.37e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g00170 zf-B_box 8.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00170 - - tpra:123898275 343.969