Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00165 ATGGAGTTTGCGGTGGCAAAAGCTTTGAAACCGAGTTTAAGGAGGGAGTTTTTTCAGCAAGCGCTTTGTGAAGAGATTTTTTGCTTGAACGCTAACACAGTGGTTGGTGGTGAGGATTTTTCCGTGGATGACCTCCTTGACTTCTCTAACGACGAGTTCCAACAAGAGTATGACGAAGAAAAAGACAGTTTATCTGCTTCTTCCTCGCTCTCACAGGATAGCAACTCCAATTCCACCGGCGTTTCCTCTGATTCCATTTTCTCCACCGAATTATCCGTTCCGGCTGGTGATTTAGCAGACCTAGAGTGGGTTTCTCACTTCGTGGATGACTCTATTCCAGAGCTCTCCCTTCTCTATCCGGTTCAGCAAACGAACCGCTGGGCTGAACCGGAGCAAAGAGTGTGTTCAGCGAAGAAAACTCCTCGTTTTCCCTCTGAAATGAAAATAACCACAAAGGCCAGAACCATGAAGAATAGAAAACCGAACCCTCGCGTCGGGTCACTTATCCCCTTCCTCTCACGCCCGTCTTCGCCGTCGTCGTGTTCCTCCTCCGTGCTTTCATCGACGGCGCCACCGCCGCCTGTGGTGTTTGGCGAGCCGCCGGCGAAGAAGCAGAAGAGAAAGGCCGAGGCCCAAGGCGTTGGGGCCCAGGCCCAGGCCCAGGCCCAGTTACAGAGACGGTGCAGTCATTGCCAAGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCACTAGGCGCCAAAACCCTTTGCAACGCGTGTGGGGTTCGTTACAAGTCCGGTCGGCTTTTTTCAGAGTATAGACCGGCCTGCAGCCCCACCTTCTGCAGTGAGATTCACTCGAATAGCCACCGTAAAGTGTTGGAGATAAGGCGGAAGAAGGAGGTGGCTGGACCGGAGACCGGTTTGGGTCAGATTCAAATGGTCCCAACTTGCTGA 936 0.5299 MEFAVAKALKPSLRREFFQQALCEEIFCLNANTVVGGEDFSVDDLLDFSNDEFQQEYDEEKDSLSASSSLSQDSNSNSTGVSSDSIFSTELSVPAGDLADLEWVSHFVDDSIPELSLLYPVQQTNRWAEPEQRVCSAKKTPRFPSEMKITTKARTMKNRKPNPRVGSLIPFLSRPSSPSSCSSSVLSSTAPPPPVVFGEPPAKKQKRKAEAQGVGAQAQAQAQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSEIHSNSHRKVLEIRRKKEVAGPETGLGQIQMVPTC. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00165 311 Gene3D - 222 272 IPR013088 GO:0006355|GO:0008270
Seca3g00165 311 SMART GATA_3 222 276 IPR000679 GO:0006355|GO:0043565
Seca3g00165 311 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Seca3g00165 311 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Seca3g00165 311 MobiDBLite consensus disorder prediction 64 84 - -
Seca3g00165 311 MobiDBLite consensus disorder prediction 172 190 - -
Seca3g00165 311 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Seca3g00165 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 284 - -
Seca3g00165 311 MobiDBLite consensus disorder prediction 157 218 - -
Seca3g00165 311 PANTHER GATA TRANSCRIPTION FACTOR 27 296 - -
Seca3g00165 311 PIRSF Txn_fac_GATA_plant 17 308 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca3g00165 311 MobiDBLite consensus disorder prediction 57 84 - -
Seca3g00165 311 CDD ZnF_GATA 227 284 IPR000679 GO:0006355|GO:0043565
Seca3g00165 311 FunFam GATA transcription factor 218 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00165 Seca-Chr3 2527955 2530030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00165 8 309 C2C2-Gata Transcription Factor Family AT5G66320 40.841 1.75e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g00165 GATA 9.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00165 - - gmx:100808242 383.645