Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00158 ATGGATGCCGAAGATGAGGAACCTCTACCAAACAAATCTTCTCCTCCTCCTCCACTCCAACAACACTCCGATTCACCGCCACACCTCTCAACCAATGCCTCACAATGCGACACCGACATTCAAAATTTCTCCAACGCAGGCGGAGGAGACGTGCTGCCGGCGTCACCCGTCCCTGGCGGAGTCCTTGAGGCTGTGATCGCAGGGGAGTCGAGCCATGCGGGCACAAGTACGGAGAATAAAGAGGACAGCACGGTTGTTGGTGAAGCGGTGGTGCTTGCGGCCGAAGCGGTGGTGCTTGCGGCTGATGTGACGAAGGAGACGGTGTCCGATTTGGGCGACGAAATGCAAGTGATGGACGTAGAGGGAAATGAAATTGTGGAGGGGAAAGGGATTGAACGAACCGTTGTGGATGACGTGGCTTTGGAGACCGGGAAGGTAGAAGAGGAAGCCAATTTGGCAATCGAGGAGGACGAGAAGACAAATGAAGCTGCTTTGATGGAAGAAGAAGGAGAAGAAGAACAAGGAGAAGAACAAGAAGAAGAACAAGAAGAACAAGAAGAAGAAGAAGCTGATGCTGATGTTGGTGTGGCAGAAGATAGAGAGGATGCCGAGGAGATAGAGGTAGATGAAGAGGGTGCCGAGGAGATAGAGGTGGATGAAGAGGGTGCCGAGGAGATAGAGGTGGATGAAGAGGGTGCCGAGGAGATAGAGGTGGCAGAAGAGATAGAGTTGGAGGAAGAGGCTCCCGAGGAGATAGAGGTAGCGGAGGATCAGAGTCCAAGTGTCAGTGGTGGGAAGAGGAAGCGTGGGGGTGGGAAGAATGCTAAGTCTACAGGGAGAGTTCCATCCAGGAAAAAGATGGAAGAAGATGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGCGACCGCAGGGGATGCCCCAAGGCATACCATCCTTCTTGCGTTAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAACTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATACTATATGTGCTATACATGCACATTCTCTTTGTGCAAGGGTTGCATCAAAGATGCTGTTATCATATGCGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAACATGGGACAAGTGGATTTCAATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGTTATCTCTAACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCCTTCTAAAGAGGAATCACCAGATGAACTTTTTGATGCCAGTAATGATAGAGGATCAGATTCAGATAGCTCCTATGAGAATGTAGATTTGAGTCGTTCTAAAAGAAGAAAGGCCAAGAAACGGGCGAAATCCCGTTCCAAAGAAGATGAAAGCTCTGAGTGGGCTTCAAAGGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGATAAATCTGTTTTGTCTCAGTTTGATGTCCAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAGAATTTGTTTGGTAAACCAAGAGTTGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTTTAAAAGAGGATTCTCAAGCTGAAGATCTACAGGGGAGTGTTGTTGATACTGAAGCTAGTCATTTGGAAGGTGATGGCAATTCTGATTCATATCTGAAAGCTGGAAAAGATAAGAGGCGTAAAAGTCGTAAAAAGGGCGATGAGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTACTTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGAGAAGTTTCATGAAAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCCAGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAACGGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTTCGCCAAAGCATAAAATGTGGTCTCATAAATCGGCTGACTGTGGGTGACATTCAGGACAAAGCATTGGTACTTCAGGAAGTCAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGCGGCTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAGGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGTAGATTGGAGGAAATACCAGAAATACATGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGGAGATGAAATGGAGGACAAAAGACTAGAAAACCACATGAGACCTAGAGGGTCTACTGCCTTTGGACGGAGGGGGAGAGAAATGGTTTCTCCCAGAAGTGGTTCTATATCAAGTGATTCTTGGAGTGGAACAAGGAATTATTCTAATATGAATCAGGAACTCAGCAGAAATCTATCTAATAAGGGATTTTCAATCAAAGGGGATGATGTTTCTAATGCTAGTGAGGTATTAAATGATGCTCACTTGCACCAGGGAAGAGATAGAGAATTACAACTATCTAATACCCGGGAGAGGCAAAAGCTATCTTCAAGCTTCGAGAGTGGTGCTAAAAATACCCAGCCATTGGTAACATCTGAGACTTTTTCAACTACCGTGCTAGAAACTTCCGCAGCACCATCTTCTGCTGGAATAGCTCCCCCAGCTGTGAAAGTTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCCGCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGCTTCGCAAATGGAGTAACACAGGATACTTTCCTGCTGAATTGAGGATTTGGAGAACCACCGAGAAGCAAGATGAATCTATACTCTTAACAGATGCCTTAGCAGGGAAATTTTCAAAGGAGCCATCGATTGTGGATAGAACACTTCCTAAGGCTCAAACAGTGCATGATTTACATTACTCATCGCTGCACTCTAGGAAGTCTCATTTGGCCTCCCAAGGTATAGAAGGTCAAGTTGGAGGAAGACCAACATTTGATAATATGAATTCTTTAGCAAGTAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAATCCTGGAAATGGATGGGGTTCTGATGCTGGTGTTAGAAATGACTCAACAAATCTTCCTTCACCTACTCCCCAGACTACTTCTGGTGGGATTAAGGGGCAGGCTTTTGAAAATAGATGGTCACCAACACCTGTCCAGTTAACTGGATCTCTTGTGGGAAATTCATTCCCAGCCGGTCCTGGAGGTTTGCAGGCCTCTCTGGTAGTGCTCCCAGAGAATGTCATGCAGAAAGCTGAAAATGGTTCAAATTCGCAACCTGGTATGATATTGAGCTCTACAGATACCACACAAACACATCCTCAAGCAACAGCAGCGGCACCTGTTGTGGCTTCAGGTATTGACATCAAAACGGCAGGTCTAAATATGCAAAATCAGGTTGTGAGTAACCATAACTCTCATGCTGAAACTCAAGGGTGGGGTTCTGCTGTGGTTCCAAAACCAGATCCACAAGCCTGGGGAGGTACTCCATCTCAAAGGGTAGAGCCAATTAATCCTGCTACTATGCCTGCCCAGCCAGCTTCCCATGGCCTCTGGGGTGATGCTTCATCTGTCCAGAACTCTGCCTCATTTAACACTGCAAATCCAACTGGAAGTTTACCCATGCCTGGCTTTCCGGGCATGACTACATCTGAGCCTTGGAGACCACCAACTTCAAATAGTCAATCAAACATTACAGCTCCAGCACCACCCAATATGATGGGAATGGGGATGGGGATGGGCATGGGCATGCCAGGAAATCAGAATATTAGCTGGGGCGGGGCTCTACCTGCCAACATGAACGTAAACTGGATGCCTGCGCAAGTACCAGCACCTGGAAATGCAAATCCAGGATGGGCTGCTCCTAGCCAGGGGCTACCTCCAGTAAATGCAGTTGGCTGGGTTGCGCCTGGTCAAGGACGTCCACAGGTAAATGCAAATGCAAGTTGGGTGGTGCCTGGTCAAGGGCTAGCACCTGGAAGTGCCAACCCTGGTTGGGCTGCATCGTCTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCTAACCAAGGGGATCGTGGTACCCATGGTGGAGATTCTGGTTATGGAGGTAAATCTTGGAACAGACAGTCATCATTTGGCAGCGGAGGCAGAGGGGGTTCTTCCAGGCCTCCTGTTGGGGGACAAAGAGGAGTCTGCAGGTTTCATGAGAGTGGACATTGCAAGAAGGGGGCCTCCTGTGATTTTCTACATAATTAA 4545 0.4563 MDAEDEEPLPNKSSPPPPLQQHSDSPPHLSTNASQCDTDIQNFSNAGGGDVLPASPVPGGVLEAVIAGESSHAGTSTENKEDSTVVGEAVVLAAEAVVLAADVTKETVSDLGDEMQVMDVEGNEIVEGKGIERTVVDDVALETGKVEEEANLAIEEDEKTNEAALMEEEGEEEQGEEQEEEQEEQEEEEADADVGVAEDREDAEEIEVDEEGAEEIEVDEEGAEEIEVDEEGAEEIEVAEEIELEEEAPEEIEVAEDQSPSVSGGKRKRGGGKNAKSTGRVPSRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCIKDAVIICVRGNKGFCETCMRTVMLIEQNEQGNNMGQVDFNDKNSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDMLPSKEESPDELFDASNDRGSDSDSSYENVDLSRSKRRKAKKRAKSRSKEDESSEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEASHLEGDGNSDSYLKAGKDKRRKSRKKGDERGLQSNVDDYAAIDNHNITLIYLRRNLVEDLLEDTEKFHEKVVGSFVRIRISSSGQKQDLYRLVQVVGTCKATEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQEVRVKDWLETETVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDGDEMEDKRLENHMRPRGSTAFGRRGREMVSPRSGSISSDSWSGTRNYSNMNQELSRNLSNKGFSIKGDDVSNASEVLNDAHLHQGRDRELQLSNTRERQKLSSSFESGAKNTQPLVTSETFSTTVLETSAAPSSAGIAPPAVKVNETEKMWHYQDPAGKVQGPFSMVQLRKWSNTGYFPAELRIWRTTEKQDESILLTDALAGKFSKEPSIVDRTLPKAQTVHDLHYSSLHSRKSHLASQGIEGQVGGRPTFDNMNSLASRTSPLAVEVPKNPGNGWGSDAGVRNDSTNLPSPTPQTTSGGIKGQAFENRWSPTPVQLTGSLVGNSFPAGPGGLQASLVVLPENVMQKAENGSNSQPGMILSSTDTTQTHPQATAAAPVVASGIDIKTAGLNMQNQVVSNHNSHAETQGWGSAVVPKPDPQAWGGTPSQRVEPINPATMPAQPASHGLWGDASSVQNSASFNTANPTGSLPMPGFPGMTTSEPWRPPTSNSQSNITAPAPPNMMGMGMGMGMGMPGNQNISWGGALPANMNVNWMPAQVPAPGNANPGWAAPSQGLPPVNAVGWVAPGQGRPQVNANASWVVPGQGLAPGSANPGWAASSGNPGMWGSEQSHNGDRFPNQGDRGTHGGDSGYGGKSWNRQSSFGSGGRGGSSRPPVGGQRGVCRFHESGHCKKGASCDFLHN. 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00158 1514 ProSiteProfiles Zinc finger C3H1-type profile. 1489 1514 IPR000571 GO:0046872
Seca3g00158 1514 Pfam Plus-3 domain 636 739 IPR004343 GO:0003677
Seca3g00158 1514 SUPERFAMILY FYVE/PHD zinc finger 288 342 IPR011011 -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 819 880 - -
Seca3g00158 1514 FunFam Zinc finger CCCH domain-containing protein 19 281 381 - -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 442 457 - -
Seca3g00158 1514 ProSitePatterns Zinc finger PHD-type signature. 292 352 IPR019786 -
Seca3g00158 1514 SMART gyf_5 981 1036 IPR003169 GO:0005515
Seca3g00158 1514 FunFam Zinc finger CCCH domain-containing protein 19 482 577 - -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 1 58 - -
Seca3g00158 1514 Coils Coil 154 193 - -
Seca3g00158 1514 CDD GYF 980 1035 IPR003169 GO:0005515
Seca3g00158 1514 Gene3D - 981 1040 IPR035445 -
Seca3g00158 1514 CDD Bbox1 337 363 - -
Seca3g00158 1514 ProSiteProfiles Plus3 domain profile. 631 764 IPR004343 GO:0003677
Seca3g00158 1514 ProSiteProfiles GYF domain profile. 980 1034 IPR003169 GO:0005515
Seca3g00158 1514 MobiDBLite consensus disorder prediction 1105 1136 - -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 928 945 - -
Seca3g00158 1514 CDD PHD5_NSD 291 336 - -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 1427 1450 - -
Seca3g00158 1514 SMART rtf1 631 741 IPR004343 GO:0003677
Seca3g00158 1514 MobiDBLite consensus disorder prediction 588 621 - -
Seca3g00158 1514 SMART swib_2 504 575 IPR019835 -
Seca3g00158 1514 SUPERFAMILY Plus3-like 632 761 IPR036128 GO:0003677
Seca3g00158 1514 CDD SWIB-MDM2_like 495 570 - -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 863 880 - -
Seca3g00158 1514 FunFam Zinc finger CCCH domain-containing protein 19 982 1039 - -
Seca3g00158 1514 Gene3D SWIB/MDM2 domain 482 580 IPR036885 -
Seca3g00158 1514 Pfam GYF domain 983 1025 IPR003169 GO:0005515
Seca3g00158 1514 MobiDBLite consensus disorder prediction 1422 1493 - -
Seca3g00158 1514 ProSiteProfiles Zinc finger PHD-type profile. 289 355 IPR019787 -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 914 945 - -
Seca3g00158 1514 ProSiteProfiles SWIB/MDM2 domain profile. 489 572 IPR003121 -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 1466 1480 - -
Seca3g00158 1514 SUPERFAMILY GYF domain 971 1033 IPR035445 -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 436 491 - -
Seca3g00158 1514 Pfam SWIB/MDM2 domain 497 570 IPR003121 -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 161 254 - -
Seca3g00158 1514 Gene3D - 633 762 IPR036128 GO:0003677
Seca3g00158 1514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 383 IPR013083 -
Seca3g00158 1514 PANTHER UNCHARACTERIZED 166 1513 - -
Seca3g00158 1514 SMART PHD_3 291 337 IPR001965 -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 24 45 - -
Seca3g00158 1514 SUPERFAMILY SWIB/MDM2 domain 492 571 IPR036885 -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 152 282 - -
Seca3g00158 1514 FunFam Zinc finger CCCH domain-containing protein 19 632 761 - -
Seca3g00158 1514 MobiDBLite consensus disorder prediction 1113 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00158 Seca-Chr3 2467951 2481843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00158 289 376 PHD Transcription Factor Family AT5G36670 32.000 3.59e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca3g00158 Plus-3 4.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00158 - - aprc:113865790 2140.93