Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00152 ATGCCAGCGCTTTGCGACGTTTGTAAGAGTGCCGCCACGATTCTCTTCTGCGCTGCTGACGAGGCTGCTCTCTGCTATGCTTGCGATGATAAGGTCCATATGTGTAACAAGCTTGCTAATAAACACATTCGGGTTGGGCTTGCTGACCCCAGCGACGTTCCTCGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTAAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATGGCACATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTATTGAGGCAGAGAGTTGAGTTTCCAGGTGACAAATCTGGCAGATTGGAAGAACTAGGGCTGCGACAACTGGATCAAAATGAATCACGGAAGGACAAAAGTCAGTCACTGATGCTAAAAACAAGAGATCGTCAGCAGAATCATAGGATCTCTCCTGTTCCAATGCTAGAAAATGATGTTGAAGGTCATGGAAAAATGGATAAAAAATTAATTGATCTTAATACTAGACCACAGTGGTTAAATGGACCACCATTAAACAACCAGGAACAGGGCATGGATATTTTAGGTGGCAACTGGCAACAATCATGA 594 0.436 MPALCDVCKSAATILFCAADEAALCYACDDKVHMCNKLANKHIRVGLADPSDVPRCDICENAPAFFYCKIDGSSLCLQCDMMAHVGGKRTHERYLLLRQRVEFPGDKSGRLEELGLRQLDQNESRKDKSQSLMLKTRDRQQNHRISPVPMLENDVEGHGKMDKKLIDLNTRPQWLNGPPLNNQEQGMDILGGNWQQS. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00152 197 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca3g00152 197 SMART bboxneu5 51 96 IPR000315 GO:0008270
Seca3g00152 197 MobiDBLite consensus disorder prediction 120 155 - -
Seca3g00152 197 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Seca3g00152 197 MobiDBLite consensus disorder prediction 175 197 - -
Seca3g00152 197 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 135 - -
Seca3g00152 197 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g00152 197 CDD Bbox1_BBX-like 56 96 - -
Seca3g00152 197 MobiDBLite consensus disorder prediction 120 142 - -
Seca3g00152 197 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Seca3g00152 197 CDD Bbox1_BBX-like 4 47 - -
Seca3g00152 197 FunFam B-box zinc finger protein 19 2 92 - -
Seca3g00152 197 Gene3D Classic Zinc Finger 2 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00152 Seca-Chr3 2392984 2396065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00152 1 196 C2C2-CO-like Transcription Factor Family AT2G21320 54.592 1.43e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g00152 zf-B_box 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00152 - - gmx:100818604 321.627