Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00143 ATGGCTGCGCCAAATCTCTCTACCCTCTCCTCCTCCACCTCTCTCTCCAAATCCAAACCTTCCTCTCTCCCTTTCAACACATCAACCACCACCACTTGTTTCTTCCACACCAAAACCCTCCCAAACAACCCCACCTTGTTCCCCAAAACCACTCTTTCCCACACCCACACAACCCCTTTCTCCGCTTCATGCACAAACACAAACAACACATTCCCAGAAGCTTTCTTCAACGATGATGAAAAGCCCCGTGAAGAGTGCTGTGTGGTGGGTATATACGGTGATCCAGAGGCATCTCATCTCTGCTATTTGGCTCTTCACGCCCTCCAACACCGTGGCCAAGAAGGTGCAGGAATCGTCGCAGCGCATAACAACGTCCTTCAATCGATAACTGGTGTTGGCCTCGTCTCTGAAGTGTTCAATGAGTCCAAACTCGATCGATTACCTGGAACTTCCGCTATTGGCCATGTTCGTTACTCAACCGCAGGCCAATCCATGCTCAAAAATGTTCAACCTTTTGTTGCAGAGTATCGCTTTGGCTCTGTTGGGGTTGCTCATAACGGCAATTTGGTCAATTATCGTTCCTTAAGGGCAAAACTTGAAGACAGTGGTTCCATTTTCAACACAAGTTCTGATACTGAGGTTGTGCTTCATCTTATTGCCACCTCAAAGCATAGACCTTTTCTCTTGAGGATTGTTGATGCCTGTGAGAAACTTCAAGGGGCATATTCTCTTGTGTTTGTTACTGAGAATAAGCTTGTTGCTGTGAGGGACCCTTTTGGGTTTCGACCATTGGTTATGGGGAGGAGAAGTAATGGTGCTGTTGTTTTTGCCTCTGAGACATGTGCTCTTGATTTGATTGAAGCCACATATGAGAGGGAGGTGTACCCTGGTGAAGTTTTGGTGGTGGACCAGAATGGCCTTCAATCACTTTGCCTCATGTCTCATCCACAACCAAAACAATGTATATTTGAGCATATTTACTTTGCACTGCCCAATTCTATTGTTTTTGGGAGGTCAGTGTATGAATCTCGCAGGATGTTTGGGGAAATATTGGCTACTGAGAGTCCTGTTGAGTGTGATGTTGTGATAGCAGTTCCAGATTCTGGTGTGGTGGCTGCTCTTGGTTATGCTGCAAAAGCTGGGGTTCCCTTTCAGCAAGGGCTGATCAGGTCACACTATGTGGGGAGGACTTTCATTGAGCCTTCCCAGAAGATTAGGGACTTTGGTGTGAGGTTGAAGCTGTCACCAGTGAGGGCTGTGCTTGAAGGCAAGAGGGTTGTGGTTGTGGATGACTCAATTGTGAGGGGAACTACATCATCCAAAATTGTGAGGCTGATAAAAGAAGCAGGTGCTAAGGAAGTTCACATGAGGATTGCATGCCCACCAATTATAGGATCATGTTATTATGGGGTGGACACACCAAGCTCAGAGGAGTTGATCTCTAATAGGATGAGTGAGGATGAAATAAGGGAGTTTATTGGATGTGATTCACTTGCTTTTCTTCCATTTGATAGCTTGAAGAAGTTGTTGGGTAATGATGCTCCCAATTACTGTTATGCTTGCTTCTCTGGGATGTATCCTGTTGAACCCACAGAACTTAAAGTCAAGAGGATTGGTGACTTCATGGATGATGGCTTAAATGGGAGTTTTGAATCTATTGATGGGGGTTGGGTTCAAGCAAACAGAAATCAGAAAGGGGTTAAGATTGTTAGTATCTAA 1719 0.4549 MAAPNLSTLSSSTSLSKSKPSSLPFNTSTTTTCFFHTKTLPNNPTLFPKTTLSHTHTTPFSASCTNTNNTFPEAFFNDDEKPREECCVVGIYGDPEASHLCYLALHALQHRGQEGAGIVAAHNNVLQSITGVGLVSEVFNESKLDRLPGTSAIGHVRYSTAGQSMLKNVQPFVAEYRFGSVGVAHNGNLVNYRSLRAKLEDSGSIFNTSSDTEVVLHLIATSKHRPFLLRIVDACEKLQGAYSLVFVTENKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVLVVDQNGLQSLCLMSHPQPKQCIFEHIYFALPNSIVFGRSVYESRRMFGEILATESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVRLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIACPPIIGSCYYGVDTPSSEELISNRMSEDEIREFIGCDSLAFLPFDSLKKLLGNDAPNYCYACFSGMYPVEPTELKVKRIGDFMDDGLNGSFESIDGGWVQANRNQKGVKIVSI. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00143 572 CDD GPATase_N 86 336 IPR035584 -
Seca3g00143 572 Hamap Amidophosphoribosyltransferase [purF]. 85 526 IPR005854 GO:0004044|GO:0009113
Seca3g00143 572 NCBIfam amidophosphoribosyltransferase 86 527 IPR005854 GO:0004044|GO:0009113
Seca3g00143 572 Pfam Glutamine amidotransferase domain 164 283 IPR017932 -
Seca3g00143 572 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 86 309 IPR029055 -
Seca3g00143 572 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 84 532 - -
Seca3g00143 572 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 86 305 IPR017932 -
Seca3g00143 572 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 86 527 IPR029055 -
Seca3g00143 572 Gene3D - 345 509 IPR029057 -
Seca3g00143 572 CDD PRTases_typeI 343 459 IPR000836 -
Seca3g00143 572 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g00143 572 SUPERFAMILY PRTase-like 321 532 IPR029057 -
Seca3g00143 572 Pfam Phosphoribosyl transferase domain 344 456 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00143 Seca-Chr3 2251239 2252957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00143 66 559 PRT Gene Family AT2G16570 83.266 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00143 K00764 - gmx:100801720 907.131