Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00139 ATGTCGCCGGCAACCGGAAATTGCAGCAAGATCCGGCACATTGTAAGGGTCCGGCAAATGCTAATGCGGTGGCGCAAGAAATCGTGCGTGAAGGCGCCGTTTGATGTCCCAGCGGGACACGTGGCGGTGTGTGTGGGTCCGAGCAGCATGAGGTTCGTGGTGCGCACGACGTACCTGAACCACCCGATCTTCCAGAAGCTTCTTTTGCAAGCGGAGGAAGAGTATGGGTTCTGCAACCATGGCCCGTTAACGATCCCGTGTGATGAATCGCTCTTCCAAGAGCACTTGCGGGTTATGTCCCGGTCCGAGTCGACTCGGTTCTCTAACCTCGAAGATCTTCAGAGGCGTTGCCACGTGGACGTCCCAAGTTTCCTTGACGTTGTTGGAGAATCCACTTCCACTTCCAGGCCTTTGCTTCATGACCAGCCTATTTGCTGA 438 0.5548 MSPATGNCSKIRHIVRVRQMLMRWRKKSCVKAPFDVPAGHVAVCVGPSSMRFVVRTTYLNHPIFQKLLLQAEEEYGFCNHGPLTIPCDESLFQEHLRVMSRSESTRFSNLEDLQRRCHVDVPSFLDVVGESTSTSRPLLHDQPIC. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00139 145 Pfam Auxin responsive protein 18 98 IPR003676 GO:0009733
Seca3g00139 145 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 25 96 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00139 Seca-Chr3 2196728 2197165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00139 6 139 Calmodulin-binding Proteins AT4G34750 46.939 7.93e-39 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00139 K14488 - jre:108986945 199.904