Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00112 ATGTCGAACCCTAAGGTTTTCTTCGACATGACAATCGGAGGCCAACCTGCCGGCCGCATAGTGATGGAGCTATACGCCGACACTACCCCTAGGACCGCCGAGAACTTCCGCGCCCTTTGCACCGGCGAGAAGGGAGTCGGTCGCAGCGGCAAGCCCCTCCACTACAAGGGCTCGTCCTTCCACCGCGTCATCCCCAATTTCATGTGCCAAGGCGGTGATTTCACCGCCGGGAACGGCACCGGCGGCGAGTCCATCTACGGTTCCAAGTTCGCGGACGAGAACTTCATCAAGACGCACACAGGTCCAGGTATTCTGTCGATGGCAAATGCGGGGCCCGGAACGAACGGATCTCAATTCTTCATCTGCACGACGAAGACGGAGTGGTTGGATGGGAAGCACGTGGTTTTCGGTCAGGTGGTAGAAGGCATGGAAGTGGTGAAGGAGATCGAGAAGGTGGGATCCGGTTCCGGCAAGACCTCCAAGCCGGTTGTCATCGCTGACTGCGGTCAACTCTCTTAG 519 0.5819 MSNPKVFFDMTIGGQPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKTHTGPGILSMANAGPGTNGSQFFICTTKTEWLDGKHVVFGQVVEGMEVVKEIEKVGSGSGKTSKPVVIADCGQLS. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00112 172 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Seca3g00112 172 PIRSF Peptidylpro_ismrse 1 172 IPR024936 GO:0003755
Seca3g00112 172 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Seca3g00112 172 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 169 IPR002130 GO:0000413|GO:0003755
Seca3g00112 172 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
Seca3g00112 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
Seca3g00112 172 CDD cyclophilin_ABH_like 4 169 - -
Seca3g00112 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Seca3g00112 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Seca3g00112 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Seca3g00112 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Seca3g00112 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Seca3g00112 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Seca3g00112 172 Gene3D - 1 172 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00112 Seca-Chr3 1765587 1769160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00112 18 152 U-box Gene Family AT5G67530 48.529 1.45e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00112 K01802 - gmx:106795232 335.109