Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00106 ATGGACGGCGATGTTGGGCGTTGGTCGTTGGAGTTCATTCTTGGGAAGTCATTCAGAGTCACAGACAGTAACCTAATTAAGAGAATGATTTGCAGTATCCCTCTTTCAGACAACGATTCCTTCCTGAAGAAGGCTATTCTCCTCAAAACCCTTCAAGACGAGTTGTCCACCGTCTCTATTCAAGAGTCCATGCTTGAAATTCTCGAGATCCTGGAGGAAGTCCTTCGTCGCGATGGCTCTCCAATCACCGCCACCATGAGCGCCGCATATTGTGGCGTTGCAGTGGAGTGTACTCTCAAGTATCTGGAACTCGAACTCTCCCACCCTGCCTACATCGACGCCGTCAAGAGGATATGGTCGGATAGGATTTGCTACATGGAGCCTTCACGTTCCGGTGAAGGAAGCCTCTTGTTCTCCGCCGAATTGAACCGTTGGAGAATTGAGATTGAGGCTTCCCTTTCGGACTCGCGAGTCATGAACAGGTTGGCGGCCACACCGAATACCAGAAGGGACGCCATTAAAAAGCTCAAAGCTTATTTGGCCGAAACCTGGGCAAATATTGGTCCTTCTTTTCTTGATCTAGCAGCAGAGTCCTTGCCCACAAATCAGGGCTTGGGCAGATTATTGCCCAATTCGGTGGCTACCAGTAATAATGTTCCCACTGCTGAAGAATTGGGTGTGAGTGACTTGCCTGTGTCTCCAATAGAAATTCAGAAAGACAATAAGCTGCTTAAAGGCAAGAAGTATACTACTACTGGTATTGAGGAAATGGATCCTTCAACATGTAGCAAAATTGACTCTGTGCCAAGTCATGAAGTCCAAAAGGTTGGGGAATCTCTTGAATGCAATTCTATGGCATTTCACACCTTGACCAAGGATTCTCTGCCCAATTCATTGCATATGACTGATGTTGTAAGATCTAAGTTGGCAGTTAAAGAAATGAATCAGGATCCACCTGTGGAAGAAAACAAGAGTAGTGATGCAGATGTACCTGATCCTCATGCTTGCCAGAGTATTAACAATAATGAGGCTTATCTTAACAAGACAACTTCTGTCCATCACAGTGATGTTCAATGCCCCAGCTTGATGGAACCAAATAGTACTGCTCGTACTCATGAGAGTATTAACAATAATGAGACTAATCTTAACAAGACAACTTCTGTCCGTCAGAGTGATGGTCAACGCCCTAGCTTGATGGAACCAAATTGTACCGCTCGTACTCATGAGTGGGATGAATCGATAGATGGCTTGCAAGGGGAAACATCAAATGATGCAAGAAGATTTCATTTACCTAGCCCAAAGAGGGAGAAACATTCTCCATTGAAGAAGTATGAACCAACAAACATTACAAAAAGGAGAAAAGTAAAAAAATGGAGTGAACTAGAGGAGGAGACGTTAAGGACTGCTGTAAATAAATTTGGCAAAGGAAATTGGAAATGGATCCTCAATTCTTACAGAGATATATTTGAAGATAGAACTGACGTTGATTTGAAGGATAAATGGAGAAATATGTCCCGATATGGAAACAAATGA 1533 0.4364 MDGDVGRWSLEFILGKSFRVTDSNLIKRMICSIPLSDNDSFLKKAILLKTLQDELSTVSIQESMLEILEILEEVLRRDGSPITATMSAAYCGVAVECTLKYLELELSHPAYIDAVKRIWSDRICYMEPSRSGEGSLLFSAELNRWRIEIEASLSDSRVMNRLAATPNTRRDAIKKLKAYLAETWANIGPSFLDLAAESLPTNQGLGRLLPNSVATSNNVPTAEELGVSDLPVSPIEIQKDNKLLKGKKYTTTGIEEMDPSTCSKIDSVPSHEVQKVGESLECNSMAFHTLTKDSLPNSLHMTDVVRSKLAVKEMNQDPPVEENKSSDADVPDPHACQSINNNEAYLNKTTSVHHSDVQCPSLMEPNSTARTHESINNNETNLNKTTSVRQSDGQRPSLMEPNCTARTHEWDESIDGLQGETSNDARRFHLPSPKREKHSPLKKYEPTNITKRRKVKKWSELEEETLRTAVNKFGKGNWKWILNSYRDIFEDRTDVDLKDKWRNMSRYGNK. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00106 510 PANTHER MYB TRANSCRIPTION FACTOR 1 373 - -
Seca3g00106 510 SUPERFAMILY Homeodomain-like 457 508 IPR009057 -
Seca3g00106 510 MobiDBLite consensus disorder prediction 315 329 - -
Seca3g00106 510 MobiDBLite consensus disorder prediction 413 445 - -
Seca3g00106 510 CDD SANT_TRF 456 506 - -
Seca3g00106 510 MobiDBLite consensus disorder prediction 313 333 - -
Seca3g00106 510 Pfam Myb-like DNA-binding domain 456 503 IPR001005 -
Seca3g00106 510 MobiDBLite consensus disorder prediction 427 445 - -
Seca3g00106 510 ProSiteProfiles Myb-like domain profile. 450 505 IPR001005 -
Seca3g00106 510 SMART sant 454 507 IPR001005 -
Seca3g00106 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 450 509 IPR017930 -
Seca3g00106 510 MobiDBLite consensus disorder prediction 356 401 - -
Seca3g00106 510 Gene3D - 447 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00106 Seca-Chr3 1651259 1655378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00106 418 504 Single Myb Histone (SMH) Gene Family AT1G15720 45.977 2.24e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g00106 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00106 - K11111 aprc:113864424 455.677