Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00092 ATGTCCACTGATAAGGCTGGAAGCTCGAGACAAAATAGGAGGGTTGATCGTTTCGTAGCTAAGTTGACCCCTAATGAGGATATGGTGTTTATAGAGAATAAATTTTGGTTGAAGTTTCAAGGTGAAATTAGGGGTCGAAATGTTATCCTAATGGACCCTGCTGGGTTTACTTTTAATGTGTCTGTAGAGTTCCATGGGTATAATGAGGTTGGAATTATGACTGGAGTTGAAAACATTGTTACTCGCTATAACTTGGTTAAGAGTTACTGGGTGTTATTTACATATAAAGGGAATTGTGAGTTTGACATTAGAGTAGTGAATGGAAATGTGGAGGTCAAGTATCCTAGGGTTGAAACTGATGAAGATGTTGATGTCCAACCTGTGGAGTATGAGGAGGACCCTGAGGAGCCCCTATTTATGTGGGAAGTTACTTTGACAAAGGCTGCTGCATCCGGTGCTAACGCTTTGCTCATACCTGCTAGGATTGTGAGGGACATATTGGACAATAATCAGGAAGTTGTGACTGTTATAGATGAGGGTGGTGAATTAATTCCATGCAAGGTTCTGAAGCCTAAAAGACGACCAAGTGAGCGGTACCTATCCAGTGGGTGGTATGAGTTTATTCGGGGAAAGAAATTGAAGGTTGGGGATAAGATAAGATTTTACTCAGATGATAGTATGGAATCTTTGTCTGCGGTTGTAGAACGCATTTGA 714 0.4118 MSTDKAGSSRQNRRVDRFVAKLTPNEDMVFIENKFWLKFQGEIRGRNVILMDPAGFTFNVSVEFHGYNEVGIMTGVENIVTRYNLVKSYWVLFTYKGNCEFDIRVVNGNVEVKYPRVETDEDVDVQPVEYEEDPEEPLFMWEVTLTKAAASGANALLIPARIVRDILDNNQEVVTVIDEGGELIPCKVLKPKRRPSERYLSSGWYEFIRGKKLKVGDKIRFYSDDSMESLSAVVERI. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00092 237 SUPERFAMILY DNA-binding pseudobarrel domain 137 229 IPR015300 -
Seca3g00092 237 SMART B3_2 18 109 IPR003340 GO:0003677
Seca3g00092 237 SMART B3_2 141 236 IPR003340 GO:0003677
Seca3g00092 237 ProSiteProfiles B3 DNA-binding domain profile. 141 237 IPR003340 GO:0003677
Seca3g00092 237 CDD B3_DNA 137 226 IPR003340 GO:0003677
Seca3g00092 237 Pfam B3 DNA binding domain 142 229 IPR003340 GO:0003677
Seca3g00092 237 SUPERFAMILY DNA-binding pseudobarrel domain 17 107 IPR015300 -
Seca3g00092 237 Gene3D - 125 235 IPR015300 -
Seca3g00092 237 Gene3D - 9 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00092 Seca-Chr3 1455701 1458352 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g00092 B3 1.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00092 - K12388 ccaj:109793570 62.003