Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00088 ATGGGAAGGTCACCTTGTTGTGAGAAAGCTCACACAAATAAAGGAGCATGGACGAAAGAAGAAGATGATAGGCTGATAGCTTATATTCGAGCTCATGGTGAGGGATGTTGGCGCTCTCTCCCCAAAGCCGCCGGTCTTCTCCGCTGCGGCAAGAGTTGCCGTCTCCGATGGATCAACTATCTCCGCCCTGACCTCAAACGTGGCAATTTCACCCAACAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGTAACAAGTGGTCTCTAATAGCTGGAAGATTGCCTGGGAGAACAGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAATCAAGAATCAATTACTGCTACTGCCAACACAATTTCTTTCGCTGCTGAAGAACAAGAGAATCAGATCGATAATAAAGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCACATCAGAGTATAGAGATGAGAAGCCTTTGCTTTGGTTGCAGTTTGGGTTTGCAGAATAGCAAGGATTGCAGCAGCTGTGGGATTATTAATATTAATGGCGGAGGCAACAATGGTACTGTTGGTGGTGAGAGCATCATCGACACTGCTACTGGTTACGATTTCTTGGGCTTGAAAACCACCAATAGTACTGTTCTCGATTACAGAAGCAAAAGCAAGCTTGGAAATGAAATTCAATTAAATTTAGCAGAGATAGCTAGAGTTGGAGTTGGAGTTGGAGAGGATTAA 795 0.4428 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQQEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNQESITATANTISFAAEEQENQIDNKERCPDLNLELTISPPHQSIEMRSLCFGCSLGLQNSKDCSSCGIININGGGNNGTVGGESIIDTATGYDFLGLKTTNSTVLDYRSKSKLGNEIQLNLAEIARVGVGVGED. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00088 264 Gene3D - 14 66 - -
Seca3g00088 264 FunFam MYB-related transcription factor 13 66 - -
Seca3g00088 264 CDD SANT 69 112 IPR001005 -
Seca3g00088 264 FunFam Myb transcription factor 68 137 - -
Seca3g00088 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca3g00088 264 CDD SANT 16 61 IPR001005 -
Seca3g00088 264 Gene3D - 68 142 - -
Seca3g00088 264 SMART sant 66 114 IPR001005 -
Seca3g00088 264 SMART sant 13 63 IPR001005 -
Seca3g00088 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g00088 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca3g00088 264 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 154 - -
Seca3g00088 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca3g00088 264 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Seca3g00088 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g00088 264 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00088 Seca-Chr3 1359485 1360367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00088 1 239 MYB Transcription Factor Family AT4G38620 55.944 1.54e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g00088 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00088 K09422 - qsu:112037069 347.436