Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00077 ATGATAGTTGGGGGAAGATGTATTTTAGTGGGAATTAGAATTGATAGCCATAGCAAACAGTTGCTCAATTGGGCTCTTGTCAAAGTTGCTGAACCTGGGGACTGTGTTATTGCACTCCACGTAGTTAAAACTCCAGATTATGTTTCCGAGAGCAAGGCCTTGGTTGATGATTATTTAGAGGTTTATGAAGGGTTATGCAATGTGAAAAAGATAGGTCTCTCCAGTGAGGTCTTGACAGGAAGTTCCATTCCAAACATTCTTGTCAACCAGGCAAAAACTCGTGCTGCTGTGGCTCTAGTCCTAGGGGGTAGAGCTTCCACAGCTAGATATTGCGCCAAACGACTACCACCCACCACCAATGTTATTGCTATCCAAGGTGCTAGAATTGTCTTCGGAAGGTGTACTGATAAACAACTAACAGGTTGTCTCATAGAGGATCCTAGACCAAGTCTTATTTGCACAGTGGTCCAATCTGCATTTGGTGAATCCGAGGTGAAGAGTGAGAAATCAACATGCCAAGATAGCACAGAATTGGAGGAAGAAGCATTTGAGGGAGAGCAAAGTTGCAATAAAGCTTTCTCAAGATCAATATCACAGTTTGCAGGTGACTCCACTCAGCAGAAGCTTGGGTGGCCACTTCTCCGTAGGGCCTATACAGATATAACACAGAGCCACGATGCAAGGGACATGTCTGTAGTTCAATGGGTCATGAGCTTACCAGATCGTTCACCACAGAAAAATCCACTCATTTGGGACAATTCATCTGAAAGGGGTATCAGTGACATTGAGAATGAGAGCTATCAAACAGTTTCACCTCCATCACTTGAGCTGCCAAAGTGCTTGGAGGGGATTTTAAACATTAATACATTCAATTGCAAATGGTTCAGCCTTGAGGTTCTTAAGTCTTGTACTGGTCAATTTTCTTCAGAAAATCTGATTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAACCCTCCCTGATGGGAAGGTCATTGCAGTCAAAGTTTTACAGTCATCAAAAGGAGCCTTGAAAGATTTTGCCCGTGAGGTGGAGATAATATCCTCATTGAAGCACAAAGGCATTACCCCTCTACTTGGAATTTGCATTGATGACAGTGCTTTAATCTCTGTTTATGATTATTTCCCCAAAGGTAGCTTAGAGGAAAATCTGAAAGGCAAGAACAAGGGTGGATCTTTCTTGTCATGGGAAGTCAGATTTAATGTAGCTGTTGGGATTGCTGAAGCACTCAATTACCTACACAACCAAACCTCAAAGCCTATTATACACAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCAATGGGTTTGAGCCACAATTATCTGATTTTGGACTTGCTATATGGGGACCAATAACTTCATCTTTTCTAACACAAGACGACGTAGTAGGAACATTTGGTTATCTTGCACCTGAATACTTCATGTATGGAAAGGTGAGTGACAAGATAGACGTCTATGCCTTTGGTGTAGTGCTACTTGAACTAATTTCAGGAAGGGGGCCAATCAGCTCCGGAACTTGCAAAGGACAGGAGAGTTTGGTTATGTGGGCAAAACCATTATTAGAGAGTGGGGATGTTGAAAGCTTACTGGACCCAAATTTGCAAGGGAAGTTTGATGCGGCACAAGTGCAAAAAATGGTTCTGGTAGCATCTCTATGCATTACACGGGCTGCGCGGCTTCGTCCTACATTGAATCAGATACTGAAGATATTAAAAGGATGTGATGAGAAAGTCGAGAACTTGTTTAGCTCCGACGAGAATGATCATGACCATTCGGAAAATCAAGAAAATATTGATGATGAAGTGTATCCAAATTCAAGTGCAGAGTTACACTTGAGCCTTGCATTACTTGATGTTGACAATGACACTACATCATTTAGTAGTATAGAGCATAGCAATAGTGAACATTTGAAAGAACGATGGAGCAGATCATCTAGTTTCAATTAA 1968 0.4192 MIVGGRCILVGIRIDSHSKQLLNWALVKVAEPGDCVIALHVVKTPDYVSESKALVDDYLEVYEGLCNVKKIGLSSEVLTGSSIPNILVNQAKTRAAVALVLGGRASTARYCAKRLPPTTNVIAIQGARIVFGRCTDKQLTGCLIEDPRPSLICTVVQSAFGESEVKSEKSTCQDSTELEEEAFEGEQSCNKAFSRSISQFAGDSTQQKLGWPLLRRAYTDITQSHDARDMSVVQWVMSLPDRSPQKNPLIWDNSSERGISDIENESYQTVSPPSLELPKCLEGILNINTFNCKWFSLEVLKSCTGQFSSENLIGKGGSNRVYKGTLPDGKVIAVKVLQSSKGALKDFAREVEIISSLKHKGITPLLGICIDDSALISVYDYFPKGSLEENLKGKNKGGSFLSWEVRFNVAVGIAEALNYLHNQTSKPIIHRDVKSSNILLSNGFEPQLSDFGLAIWGPITSSFLTQDDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGRGPISSGTCKGQESLVMWAKPLLESGDVESLLDPNLQGKFDAAQVQKMVLVASLCITRAARLRPTLNQILKILKGCDEKVENLFSSDENDHDHSENQENIDDEVYPNSSAELHLSLALLDVDNDTTSFSSIEHSNSEHLKERWSRSSSFN. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00077 655 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 276 381 - -
Seca3g00077 655 SUPERFAMILY Protein kinase-like (PK-like) 288 578 IPR011009 -
Seca3g00077 655 PANTHER OS08G0249100 PROTEIN 168 606 IPR046958 -
Seca3g00077 655 Gene3D Transferase(Phosphotransferase) domain 1 382 608 - -
Seca3g00077 655 FunFam Putative receptor-like serine/threonine-protein kinase 382 594 - -
Seca3g00077 655 CDD USP_Like 8 116 - -
Seca3g00077 655 ProSiteProfiles Protein kinase domain profile. 307 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00077 655 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 116 - -
Seca3g00077 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Seca3g00077 655 Pfam Protein kinase domain 308 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00077 655 SMART serkin_6 307 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00077 655 Gene3D Phosphorylase Kinase; domain 1 282 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00077 Seca-Chr3 1198151 1201919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00077 294 586 Trihelix Transcription Factor Family AT5G38560 43.000 1.34e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g00077 Pkinase 9.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00077 - - gmx:100789189 899.812