LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g00066	ATGATTAGCACTCACATGGTCTTTGCTGTTACACCCAACCCCTCTTTTTCATTGGCTATTTCCAACTGTTTTATTGAAATTCCAATATTTATTTTGTATTCCAAAGTTACCCTTGTCTTATCCAATCCACACTCAACTTCTCCTCTTTCCATAAAAGGACCCTCTCTCATCACACCACTCACCCATCTTTCACTACAGACACTCAACAAAGAGAGAAAGAAGACAATGTCGAAGGAAGTGAGCGAAGAAGGACACCAAACCCATCACGGGAAAGACTACGTTGACCCACCACCGGCACCTCTCATCGACTTGGCTGAGATTAAGCTCTGGTCCTTTTACAGAGCTCTCATTGCTGAGTTCATCGCCACTCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATCGGCCACAAGAAACAAACTGGACCATGTGACGGTGTTGGCCTTCTCGGCATAGCCTGGGCCTTCGGTGGCATGATCTTTGTCCTTGTCTACTGCACCGCTGGTATCTCTGGTGGACACATCAACCCTGCGGTTACTTTTGGACTGTTCTTGGCTCGAAAGGTGTCTCTGATTCGAGCTGTGTTTTACATGGTAGCACAGTGTTTGGGTGCTATTTGCGGTGTTGGGTTGGTGAAGGCTTTCATGAAGCACCCTTACAACTCCCTTGGAGGTGGTGCTAACTCCGTGGCTTCTGGCTACAGCAAAGGCACTGCCCTGGGTGCTGAGATTATTGGAACTTTTGTGCTTGTCTACACCGTTTTCTCCGCCACTGACCCCAAGAGAAGCGCGCGTGACTCCCATGTCCCTGTGTGTACATTTTGTTTGTTTGTATTCACTCACACACAGTCAACTACTTTTTGCTTGCATGCTCAGGAATATTGA	885	0.478	MISTHMVFAVTPNPSFSLAISNCFIEIPIFILYSKVTLVLSNPHSTSPLSIKGPSLITPLTHLSLQTLNKERKKTMSKEVSEEGHQTHHGKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHPYNSLGGGANSVASGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCTFCLFVFTHTQSTTFCLHAQEY.	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g00066	294	Pfam	Major intrinsic protein	107	282	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca3g00066	294	SUPERFAMILY	Aquaporin-like	106	282	IPR023271	-
	Seca3g00066	294	Gene3D	Glycerol uptake facilitator protein.	99	289	IPR023271	-
	Seca3g00066	294	PRINTS	Major intrinsic protein family signature	193	212	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca3g00066	294	PRINTS	Major intrinsic protein family signature	242	260	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca3g00066	294	PRINTS	Major intrinsic protein family signature	114	133	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca3g00066	294	PRINTS	Major intrinsic protein family signature	156	180	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca3g00066	294	ProSitePatterns	MIP family signature.	174	182	IPR022357	-
	Seca3g00066	294	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	78	273	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g00066	Seca-Chr3	1015280	1017220	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g00066	76	271	Major Intrinsic Protein MIP	AT4G35100	91.327	3.58e-131	372

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g00066	K09872		-	thj:104804325	371.318