Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00063 ATGGCATATGTTAAGGCTCAGAAATCAAAGGCCTACTTCAAGAGATACCAAGTCAAGTTTAAAAGAAGAAGAGAGGGAAAGACCGATTACCGAGCCAGGATTCGCTTGATTAATCAGGACAAAAACAAGTATAACACCCCGAAATACCGTTTTGTGGTTCGATTTGTATCCTTTTTCTTAGTCTACAGCAAGGATATCACTGCTCAAATAATATCCGCTAGCATTGCCGGTGACATTGTTCTTGCTGCAGCATATGCGCATGAACTGCCCCGCTATGGTCTTGAAGTTGGTCTTACAAATTATGCTGCAGCCTATTGCACTGGACTCCTCTTGGCTCGTAGAGTTCTTAAAATGCTTGAAATGGATGAGGAGTACGAGGGCAATGTAGAGGCTACTGGAGAGGATTTTTCAGTTGAACCTGCTGAGACCAGGAGGCCCTTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACCACAACTGGCAATCGTGTCTTTGGTGCACTTAAGGGAGCTTTGGATGGGGGTCTGGATATCCCTCACAGTGATAAAAGGTTTGCTGGTTTTGACAAGGAGAAGAAAGAGCTTGATGCTGAGGTTCACCGAAAATATATCTTTGGTGGACATGTTGCTTCCTATATGAAGACGTTGATGGAAGATGAACCAGAGAAGTACCAGTCACACTTCAGTGAATATATCAAGCGTGGGATAGATGCTGATGGAATTGAGGGACTATACAAAAAGGTTCATGCTGCCATTCGTGCAGATCCCACAATAAAGAAGTCTGAGAAGCAGCCACCAAAGGAACACAAGAGATACAACCTCAAGAAGCTCACATATGAGGAGAGGAAGACGAAGTTGATTGCACGCTTGCAAGCTCTTAACTCTGCAGCTGGAGGTGCTGATGAAGATGATGATGATGAGTGA 924 0.4437 MAYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVSFFLVYSKDITAQIISASIAGDIVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYIFGGHVASYMKTLMEDEPEKYQSHFSEYIKRGIDADGIEGLYKKVHAAIRADPTIKKSEKQPPKEHKRYNLKKLTYEERKTKLIARLQALNSAAGGADEDDDDE. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00063 307 FunFam 60S ribosomal protein L5 1 297 - -
Seca3g00063 307 CDD Ribosomal_L18_L5e 41 176 - -
Seca3g00063 307 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 296 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g00063 307 SUPERFAMILY Translational machinery components 11 258 - -
Seca3g00063 307 Pfam Ribosomal L18 C-terminal region 241 294 IPR025607 -
Seca3g00063 307 Hamap 50S ribosomal protein L18 [rplR]. 14 252 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g00063 307 Gene3D - 1 297 - -
Seca3g00063 307 PRINTS Ribosomal protein L5 signature 212 232 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g00063 307 PRINTS Ribosomal protein L5 signature 150 169 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g00063 307 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g00063 307 PRINTS Ribosomal protein L5 signature 170 189 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g00063 307 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca3g00063 307 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 181 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00063 Seca-Chr3 971180 973630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00063 1 298 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 80.872 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00063 K02932 - gmx:100805868 518.464