Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00061 ATGCACAAAACTGACATTGAGTATTCACAATGTGTGTGTGAGCATGAAACAATGGACATCAGTGAAGGAAAAGAGCCCATGGAGGATGTGTGGTTAGAGTTCCTGGATGAGGCTTTGGAGGATCTGGAAATGCTCATCCAACAGTGCGACCACATTATGCCTTCCTTTGATGATGCGCTTCTTCCAACAGCTGCAACAAGTGCAATGGAATACAATGGAAGGTGTGATCAATCACAACGAGTAGCCTCATTAAGTAGGTTTCGGCAAAAGAGGAAAGAGCGATGTTTTCATAGCAAAATTACATCTGGTGATAATGGTGCAATGGAATATCCTGAAAGATATAGTCAAACGGAACGAGCAGCCTCATTAAGTAGGTTCCAGAACAAGAGGAAAGAACGATCCTTTGGTAACAAAGTCAGATATAGTTCACGTCAAGAAGCTGCTCTCAGGTCAGGTCTTATTAGATTATAA 471 0.4204 MHKTDIEYSQCVCEHETMDISEGKEPMEDVWLEFLDEALEDLEMLIQQCDHIMPSFDDALLPTAATSAMEYNGRCDQSQRVASLSRFRQKRKERCFHSKITSGDNGAMEYPERYSQTERAASLSRFQNKRKERSFGNKVRYSSRQEAALRSGLIRL. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00061 156 PANTHER GATA TRANSCRIPTION FACTOR 28 105 150 IPR045280 GO:0006355
Seca3g00061 156 ProSiteProfiles CCT domain profile. 119 156 IPR010402 GO:0005515
Seca3g00061 156 Pfam CCT motif 119 148 IPR010402 GO:0005515
Seca3g00061 156 Pfam Jas motif 79 97 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00061 Seca-Chr3 924505 928208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00061 3 150 Tify Gene Family AT1G51600 27.517 4.12e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g00061 CCT 8.6e-08 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00061 - - jre:108988673 63.1586