Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00059 ATGGACTGTCAGTGGGATGAGAATGATGTGTCAGCAAGTCAGGCTGATGGTGAATTATTTGGCAATGCCGAACATGAACAACCTAGTTGTGGTAGTGAGGAAGAAGTAAGTGACAGTGATGTGAGCATAGAGTCAACGAACGCAGAAGATGATGAATGTGATGGAGGCATCGAATTGACAAGTATAAATAATGTGGCTGATTTTGCGAATGTTGAATGGAACAAGTTGAATGAGGAAAGTTTCCTGAAACATGACTTTGCTAACCGAGATTTGGCATTTAGATTCTACAATTGGTATGCTAGAGTGAAAGGTTTTTCAGCACGTAAGGATCGGATTGGAAAAAGAGGCGAGGTCATTGTGCGTAGTACTTTTGTTTGCTACAGAATGGGTGAACATAAAGTCCCTAGTGAAGGGTATAAAAGGGAACCAAAGCGCATAATGAGGTGTGGATGCAAAGCCCATTGCAAGGTACGTTTGAATTTAGACACTCATAGATGGCATGTGAAGGAGTTGTTTGATGAACATAACCATGAATTGCTTGATGAGAGGTTCCAAGGCATGTTACCTCGGCATAGGAGGATGGATGTGAGTGAGTTAATGCAAATGAATGACATGAGGGAAGTCGGGATTGGTATACCGAGCATTTATCAGGCACTTGCTAATCAGTGTGGTGGATTTGATAGGGTTGGATTTAGGGTTCGTGACATGTACAATGAGATTGTGAAGCAAAGGAAGAGTAAGAAGAATGATGCAAATGAGGCACTTTTGTACTTGGAAAGACTAGTTGTGGGCGATAGAGCAATGTTTGTTAGGCATGAAGTAGATGCTGATGGTAGACTGGAACATGTATTTTGGTGTGATGGAATAAGCCAGGTAGACTATGATGTTTTTGGCGATGTGGTAGCCTTTGATGCGACTTACGGGAAAAATAAATACAAGTGGCCATTAGTAGTTTTCACTGGTGTGAATCATCATCGACAAACAACAATTTTTGCATTTGCTGTTGTTTCTAACGAGACAGAGGATACTTATGTGTGGATACTGGAACAGTTTTTAGAGGCAATGGCAGGGAAACATCCTAAAGCAGTAATTACCGATGGTGATAGAGCAATGAAAAATGCTATTCAGAGGGTTTTTCCAAATGCTACTCACAGGTTGTGCGCTTGGCATTTAATCCGTAATGCAACTAGTAACATTGGCAAAGAAGGGTTTAATGCTCAATTTGCAAGATGCATGTTAGGTGACTACGAGATTGGACAATTTGAAGCCAAATGGGAAAAATTGATTAATGATTTTGGTGTACAAGAACATAGGTGGATTAGGGAAATGTACCGGAAAAGAGAAATGTGGGCTACCGCTTACCTTAGAGGCACCTTTTTTGCTTTCACGTGA 1392 0.4095 MDCQWDENDVSASQADGELFGNAEHEQPSCGSEEEVSDSDVSIESTNAEDDECDGGIELTSINNVADFANVEWNKLNEESFLKHDFANRDLAFRFYNWYARVKGFSARKDRIGKRGEVIVRSTFVCYRMGEHKVPSEGYKREPKRIMRCGCKAHCKVRLNLDTHRWHVKELFDEHNHELLDERFQGMLPRHRRMDVSELMQMNDMREVGIGIPSIYQALANQCGGFDRVGFRVRDMYNEIVKQRKSKKNDANEALLYLERLVVGDRAMFVRHEVDADGRLEHVFWCDGISQVDYDVFGDVVAFDATYGKNKYKWPLVVFTGVNHHRQTTIFAFAVVSNETEDTYVWILEQFLEAMAGKHPKAVITDGDRAMKNAIQRVFPNATHRLCAWHLIRNATSNIGKEGFNAQFARCMLGDYEIGQFEAKWEKLINDFGVQEHRWIREMYRKREMWATAYLRGTFFAFT. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00059 463 MobiDBLite consensus disorder prediction 1 50 - -
Seca3g00059 463 Pfam MULE transposase domain 300 394 IPR018289 -
Seca3g00059 463 Pfam FAR1 DNA-binding domain 94 180 IPR004330 -
Seca3g00059 463 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 461 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00059 Seca-Chr3 900858 902967 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g00059 MULE 2.1e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00059 - - tpra:123913749 458.373