Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00053 ATGGTGGTGGGTCAAGCTCTTCCTTCTCCTTCTCCGTCAATTTCGAGCCTCAAACATTCTGGAAAAGCGGTGCTTCTCACCCTCGGAGTTAGAGTCACGCCCTCTTTCTCTGTTTCCGCCACTGCTTCCACCAATCACGTTCATGAAGACACCCCCTCAACCAATGACAATGATTCTCCCACGAAACCATCATCAAGTTTCGGAAGACTGAAAGCCCACCGAGTGAAAGCTCTCATTCACAGAACCAAGCAGCAAAGACGCACTCTTGACGATAACCCTGTTCTACCATCTACGGTTTCCATTGAAGACTCTGATGACACCGATAGTCGTAAACCCCGTTCTTCAGGTACAAGGCGTTCTCCCCCTCATTTAAGAGGATGGAATGATAGCATTCCCAAGTCTCAATCACAAAAGGAACACAGAAAATCATCATTGACGGACACCAACTTTTTCAGTCTCAAGTCCTTTAAAGATATAGGCTGCACTGACAATATCATTCAATCCCTACAAAGCCAGTCTTATAAGCGCCCTTCAAATATACAGGCCATGGCATTTGCTCCTGTTGTTGGCAGAAAGACTTGTGTCATAGCTGATCAAAGTGGTTCCGGAAAGACCTTAGCTTATCTTGCACCAATAGTTCAGCGTCTCAGACAAGAAGAACTAGAAGGACATAGTAAATCCTCTTCACAAGCTCCTAGAGTGGTTGTACTGGCACCAACAGCTGAGTTGGCTTCTCAGGTCTTGAATAATTGTCGATCATTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACGGGTGGCTTTCGACAAAGAACTCAACTGGAAAATTTACAACAGGGTGTAGATGTCTTAATAGCCACACCTGGCCGTTTCTTGTTCCTGATAAAGGAAGGCTTCTTGCAGTTAACAAATCTTAGATGTGCTGTGTTGGATGAGGTTGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATGCTTGATTAATTCTTCACCAGTTGACACACAATATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTATAGTAAACTGGTTGAAGTTTTTCCCGATTGTGAAATGGTCATGGGACCTGGTATGCACCGAATAAGCTCTCGCCTTGAAGAGATTGTAGTAGATTGCAGTGGAGATGATGGACAAGAAAAAACTCCTGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGTGGAGGGAAGTCCTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAGAATGCATTAAAGCGTTTTGATAGAAAAGGAATGCGAATGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTTCAAGTATGGAAGAGTTTAGACGTTCTCCATCAAAAGAAGTTTCCCAGTTTATGGTTTGCACTGACAGAGCATCACGGGGAATTGACTTCACAGGAGTGGATCATGTAATACTTTTTGACTTCCCACGCGATCCAAGTGAATATGTACGGCGTGTGGGAAGAACAGCGAGAGGTGCTAAGGGACAGGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCACCCATTACACGATGTTCCTTTGGCTTATGAGCTAATGAAGTAG 1662 0.4356 MVVGQALPSPSPSISSLKHSGKAVLLTLGVRVTPSFSVSATASTNHVHEDTPSTNDNDSPTKPSSSFGRLKAHRVKALIHRTKQQRRTLDDNPVLPSTVSIEDSDDTDSRKPRSSGTRRSPPHLRGWNDSIPKSQSQKEHRKSSLTDTNFFSLKSFKDIGCTDNIIQSLQSQSYKRPSNIQAMAFAPVVGRKTCVIADQSGSGKTLAYLAPIVQRLRQEELEGHSKSSSQAPRVVVLAPTAELASQVLNNCRSLSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPGMHRISSRLEEIVVDCSGDDGQEKTPDTAFLNKKAALLQLVEGSPVPRTIVFCNKIETCRKVENALKRFDRKGMRMQVLPFHAAMTQESRLSSMEEFRRSPSKEVSQFMVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAKGQGKQVSLARKIMERNQKGHPLHDVPLAYELMK. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00053 553 MobiDBLite consensus disorder prediction 42 145 - -
Seca3g00053 553 MobiDBLite consensus disorder prediction 42 66 - -
Seca3g00053 553 CDD SF2_C_DEAD 378 521 - -
Seca3g00053 553 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 366 IPR014001 -
Seca3g00053 553 Pfam DEAD/DEAH box helicase 179 352 IPR011545 GO:0003676|GO:0005524
Seca3g00053 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 528 IPR027417 -
Seca3g00053 553 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 94 548 - -
Seca3g00053 553 SMART ultradead3 173 381 IPR014001 -
Seca3g00053 553 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 553 IPR001650 -
Seca3g00053 553 Gene3D - 379 543 IPR027417 -
Seca3g00053 553 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Seca3g00053 553 CDD DEADc 165 352 - -
Seca3g00053 553 Pfam Helicase conserved C-terminal domain 402 518 IPR001650 -
Seca3g00053 553 Gene3D - 125 366 IPR027417 -
Seca3g00053 553 SMART helicmild6 429 519 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00053 Seca-Chr3 733328 739798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00053 153 521 Eukaryotic Initiation Factors Gene Family AT3G19760 26.471 1.71e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00053 K13179 - gmx:100780849 731.48