Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00049 ATGAAAATAGCGAGCAGCCCAACAACGAAGCAGTCTGTTGGCGATCCAAAGACACACATGATCTCACCCTCCCGCCACTTGTTTCGATCTTCAAAAAATCTGCGAAGGAGGAAAACCGCCGCTCGTTCTTCTCGGAACCACCACATCGACCAATATGACATTTCCTCCTCCAATAGTAATAGTCCATACTACAAAGGCCTCACTGATCAATCCCTTGCTATCTTGGACGATGCTCCTACCCCTACCGCTCTTCATTCTCACCACCACACTACTAATTACCTCCTCTCATCTGGCCATAGCCCTTACTACAAAGGTCTTACCGATTATTCCCTTGCTATTGGCCCTCCCACCCCTCCTCATCTTCACAATTACCATCCTTCTTCCGATTCTAGCCCTAGCCCTTACTACAGGGGTCTCATTGATTACTCCCTTGCTCTTCATCCACCTTCATCTCCTACCACTAACTCTTCTATCTTCTCCATCAACTTCTACTCCCGCTTTTACATCAAAGGTCGGGAAGACGAAGAACTCACTGCTCCTCCGTCATCATCCATCCATGCTGATCATGTTGCCTTTCTAATTGAACACAACAACAACAACACTCTGTCAGAAGAAGAAAATAAGATGGAGTTGATGGTTGAAGAGGAGAAGCCTTTGAGGGAGACAGAATCAGATCCAGCAATCGAGGTAATTGAGAGTGTATTAGAAGAAAATTCAGAGAAAACAGTTTTGGAGGAGGAGATGGAATTGATGCCTTGCGATGATGTTGAGTTGGTGATCATTCAAGAGAAGCCATTGAGGGAGAGAGTATCAGAAGAAAGTAATACAGAGAAAACATTAATTGTGGAAGAGATGGATGTTCAAGGGAATAAGGAGGAGGAACTCACTTCTGAAAAGGAGAAGTCCACTGTCTTGTCAGTTTCTGAACAGACAGTTGAATCAGAATTAGGGAATCACAAGTTGAAGGAGGAGAAGGAGAAGAAGGACACAGTTGAGGAAGGAAATGTGTACAAGGAGTATGTTTGGGCAACCAAATACCAACCTGTCACCTTGGAAGACTTCATCTGCAACAGAGATAAAGCCCTTCAGCTTAAAGCATTGGTAAAAGATGGGTGTGCCTGTAATCATTTTATATTTGAAGGGCCACCAAATGCTGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTGTTTGGGGCTGACAAAGTGCAGGTCACAGAAGAATATAAAAACTTCAACTTGAAGGGAGAAATGATTGATAATCTGCAAGTGCGCATAAAGAAATCACCGCATCATGTTGAGGTCAATCTTTCAGAGACAAAGGGATACGAAAAACATGTAATTGATGATTTATTCAAGGACACATATGGTAAGATCATAAACAACTCACTGCCTTGTAGCCCAGAAAACTGCCAAGGTACGCTCTTCTAA 1434 0.4351 MKIASSPTTKQSVGDPKTHMISPSRHLFRSSKNLRRRKTAARSSRNHHIDQYDISSSNSNSPYYKGLTDQSLAILDDAPTPTALHSHHHTTNYLLSSGHSPYYKGLTDYSLAIGPPTPPHLHNYHPSSDSSPSPYYRGLIDYSLALHPPSSPTTNSSIFSINFYSRFYIKGREDEELTAPPSSSIHADHVAFLIEHNNNNTLSEEENKMELMVEEEKPLRETESDPAIEVIESVLEENSEKTVLEEEMELMPCDDVELVIIQEKPLRERVSEESNTEKTLIVEEMDVQGNKEEELTSEKEKSTVLSVSEQTVESELGNHKLKEEKEKKDTVEEGNVYKEYVWATKYQPVTLEDFICNRDKALQLKALVKDGCACNHFIFEGPPNAGKRSMIRAMLREVFGADKVQVTEEYKNFNLKGEMIDNLQVRIKKSPHHVEVNLSETKGYEKHVIDDLFKDTYGKIINNSLPCSPENCQGTLF. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00049 477 MobiDBLite consensus disorder prediction 29 43 - -
Seca3g00049 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 453 IPR027417 -
Seca3g00049 477 MobiDBLite consensus disorder prediction 1 61 - -
Seca3g00049 477 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 342 456 - -
Seca3g00049 477 Gene3D - 340 471 IPR027417 -
Seca3g00049 477 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g00049 477 MobiDBLite consensus disorder prediction 288 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00049 Seca-Chr3 711935 715875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00049 341 459 Core DNA Replication Machinery Family AT5G27740 29.688 1.05e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00049 K10756 - gmx:102664389 342.428