Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00048 ATGCAAGAGTTGTTGTTTATTTTGTATGGATCAATTAATCAAGTTAGTGACATGTTTACCTATTTTGTTTATCTGAAAGCGATCATTTTGTATGAGGCTGAGAAACTATCGATAGAATCCTTGTTGTATATTAAGTGGCTACTAGAAAAGTATAAAGGGTGTAGTAAGGTCTTCTTTTGTTGCTCTGATGAATCAAAGCTCCAACCTGTCAAATCACTTTGCACCACCTTCCGCCTTTCATCTCCATCAACCGAAGAGATTGCTAAGATTTTGGAATATATTGGAAAAGGAGAAGGAATAAAATTATCACGCGACGTAGTTGAAAAGATAACCTTGAGGTCCAAAAACAATCTCCGCCAAGCCATTCGTTCATTGGAGGCCACCTTCCGAAACAAGGATATCCTCAGAGACGACGATTTAATTTTAACTGGATGGGAGGATGATATTTTGAATATTGCTAAAAGTATAATCGAAGAGCAAAGTCCAAGACAGTTGTACGTCATTCGTAGAAAGCTCCGATGTCTTATGATTCATGATGTTCCTCCTAACTTTATTTACAAGTCTTTGGTTGCAGCGTTAACGAGTTTAGTTGATGACTCACTACAGTCAGGGGTTGCCAAACTCGACAAGGAGTACAATAAAACTACTGAGATCAAATTTGAAACGCTGAAGCAGTTCGGTCATACTCAAAACAAAGCATTAAACTACTTAAAAGTTGAAGAATTTATAGCGAAATTCATGAGCTGGTACAAGAACACGTCTAAAAAAAATAATCATGTGCAACTTATGGTTGGAACACAGACAAGTGGTCGTTCTTGA 819 0.3724 MQELLFILYGSINQVSDMFTYFVYLKAIILYEAEKLSIESLLYIKWLLEKYKGCSKVFFCCSDESKLQPVKSLCTTFRLSSPSTEEIAKILEYIGKGEGIKLSRDVVEKITLRSKNNLRQAIRSLEATFRNKDILRDDDLILTGWEDDILNIAKSIIEEQSPRQLYVIRRKLRCLMIHDVPPNFIYKSLVAALTSLVDDSLQSGVAKLDKEYNKTTEIKFETLKQFGHTQNKALNYLKVEEFIAKFMSWYKNTSKKNNHVQLMVGTQTSGRS. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00048 272 SUPERFAMILY post-AAA+ oligomerization domain-like 144 215 IPR008921 GO:0003677|GO:0006260
Seca3g00048 272 Gene3D - 83 142 - -
Seca3g00048 272 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 19 238 - -
Seca3g00048 272 CDD HLD_clamp_RFC 82 140 - -
Seca3g00048 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 127 IPR027417 -
Seca3g00048 272 FunFam replication factor C subunit 3 83 141 - -
Seca3g00048 272 Gene3D - 144 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00048 Seca-Chr3 707118 711914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00048 26 252 Core DNA Replication Machinery Family AT5G27740 32.751 8.50e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00048 K10756 - gmx:102664389 370.548