Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00033 ATGGAGGATGGTAGAAGGAATGTTGATGATCCTTACAGCTCAAACTGTCTAAGTAGCTTTGGTCGGCCATCAACTGCAAGTATAATGACTGAAAATACTGCACCTAATATGGTATACAGGAGAAAGAAGCTACGCAAGGGCTCGAATGCCCCTATATTCAAGCTAGGGCCAACTGATGTGCAGACAAGTGTCAATTTCCCTTCAATCATAAGTTCCTCTGCACATTTATCATCAACTGGAGATCAGTCAGCTGGTTTTCAAGATAAGCATGAAATTGAAATGGTTAAAAATCATACTGTACCTTCTATGTTATTTGATGGGGTAGCCAAAGATACCACACAGAAAAACTTAGGTATTGACAGTATAAATGATAGTTGGTCCTCTTCAAAGTCAAATATGGAACTTGTTTCAAATTCTATAGAAACTGAAATGGATGATTCTGGTGAATGCTCCTCCTCCAGTGTAATAGTTATGGATGCCACAAAGGAAGGATTAACAGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAGAGGAGATTCACTTGCCGATAATGCGGCTTCTTTGGAAGATGCTTTTACCACGGGTAATAGCTACTGTTCCAGGTTATGCAAAATATGTGGTAATCTGGATAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCGTCTTGTTACAATCCACGCTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTTAAGGAAGCAATTATCAGATCACCAAGTATCCACAGTGAAATGGGCAAATGTAGAACTGCCTCAGTTAAGACTGAATTGAATCCCATAATGTTGATGTTGAAAAACACTGAGCCATATACAACTGGTGTGCGGGTTGGTAAAGGTTTTCAAGCAGAAGTACTTGACTGGTCTGGCCCAAAAAGAAGACAGACTATATACAAAATACTCTGTCTTATGTTTTGGCACCAATCATACATGAAAGAGAGTTGTGATCTATGTGATAACAATATGCGAGGTTGGCTACATGATCAACTGACACCATTAGGCTCTATCAACAACCAAGTTTTCAGTTAA 1113 0.3792 MEDGRRNVDDPYSSNCLSSFGRPSTASIMTENTAPNMVYRRKKLRKGSNAPIFKLGPTDVQTSVNFPSIISSSAHLSSTGDQSAGFQDKHEIEMVKNHTVPSMLFDGVAKDTTQKNLGIDSINDSWSSSKSNMELVSNSIETEMDDSGECSSSSVIVMDATKEGLTEKDFCINILRSHGLLRGDSLADNAASLEDAFTTGNSYCSRLCKICGNLDSSLNMLLCDHCEDSYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKEAIIRSPSIHSEMGKCRTASVKTELNPIMLMLKNTEPYTTGVRVGKGFQAEVLDWSGPKRRQTIYKILCLMFWHQSYMKESCDLCDNNMRGWLHDQLTPLGSINNQVFS. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00033 370 ProSiteProfiles Zinc finger PHD-type profile. 205 255 IPR019787 -
Seca3g00033 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 259 IPR013083 -
Seca3g00033 370 SMART PHD_3 207 253 IPR001965 -
Seca3g00033 370 ProSitePatterns Zinc finger PHD-type signature. 208 252 IPR019786 -
Seca3g00033 370 FunFam RING/FYVE/PHD zinc finger superfamily protein 195 273 - -
Seca3g00033 370 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 157 258 - -
Seca3g00033 370 Pfam PHD-finger 208 254 IPR019787 -
Seca3g00033 370 SUPERFAMILY FYVE/PHD zinc finger 194 258 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00033 Seca-Chr3 510164 516818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00033 207 264 C2H2 Transcription Factor Family AT3G01460 37.931 5.39e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g00033 PHD 1.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00033 - - mtr:11430602 480.715