Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00002 ATGAAAATTCTTCAAGATTTAGTCCCTGGTTGTAACAAGGTAAACACAATACTAGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATAAATTACATCCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCGATGAAGCTTGAGGCAGTAATTCGAGATTGA 162 0.3827 MKILQDLVPGCNKVNTILVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVIRD. 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00002 53 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 36 IPR011598 GO:0046983
Seca3g00002 53 Coils Coil 33 53 - -
Seca3g00002 53 Gene3D - 1 53 IPR036638 GO:0046983
Seca3g00002 53 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 50 IPR024097 GO:0006355
Seca3g00002 53 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 48 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00002 Seca-Chr3 41420 41848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00002 1 50 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 90.000 1.05e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00002 - - csav:115709380 83.1889