LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05697	ATGTCTAAGAGGGTGACTTATCTGCCTGAAATTGTTTCTGGTAGAGTGGACAGGAAAATCAGGGTGAAAGTTATTAGGTTATGGAATGGTACTGATTTTGTTGATAGAAGTATTAAAAACACTATTGAGATGGTTTTGGTTGATGAAAAGGGAACTAGGATGCAATATAATATAAAGAAAGCTTTGATGGCAAGTTTTGAGAATGTATTCACAGAAAGGAGTGGTTATCTTATCCAGAATATTATGGTTGCACATAATGATGGACGGTTTAAGACATCTCCTCATAGGTTTAAGTTGAGTTTTATGGCAAATACAAGGGTACAACAAATTAACTGTGATACTTTTCCTTCAACCACATTTGTTTTTGTTCCTTTTCCTCAGATAAATCATGGTCGAATTCCCAATAACATTGCAGATATTGTTGGGCATATTGTGCAGAAAGATGACATGAAGGTGACTGAAAAAAAGGGTATCACAACAAAGCGAATAGAATTGATTTTGGAGGATTTAGAAAAGAATCATCTGGGGTGTACTTTATGGAATGATTATGCTGAGGAAGTTGAGAGCTACTTAAGTAATAAGCATCACACATCCAGTGTTGTGATAGTCATTCTGCAGTTTTGTATGATTAGGACATTCAATGGCAATGTTGGTATTTCTTCCTATTATGAAACCAGTAAAATGATGCTAAATGCTGAAGTGAAAGAAGTTGAAGATTATCGATCATGGTTGGAAGCTTCTGAAGTATCTATTACTCAGGTTCTAAGTCAACCATCTACTGATACTTTTCTTTCTGAATCTGATGATTTGATGCAAACTAAAAGGATGGCAATTGCTGAAATAGTTGAATCTTCTGAGAAGTTTCATGCATCTGTGATGGCCAATGTTATAGAGATTGATATGGCAAGAGGATGGTTTTATGAATCATGCACTCATTGTTTCAAAAAGGACCAAGATATTGGAGGAAAATGGTTATGTGAAGGAAAAAACTGTATGCGGATTGTAAATTCTGTTCGTAGGTACATGATCAATCTCAATGTAATTGATGCATCAGGGTCCACAAACTTTGTGATTTTTGACAAAGTTGGTTTAAAATTGTTTGGAAAGTCTGTTGGTGAAATGATCAAATCAAAACAGTTTGGATTCGATGATGAGTTGCCTCCTGAAATTGATATGTTGGTTGATAAAGTGTTTGTATTCAAAGTGGAGGGTGATGGAGGTCATTCAAAGTTTAAACAAACTTTTAACATAAAGTATATGACTGATGACATTGAGGTGGTTGAAAAGTTTAGAAAGAAACATTTCATTAAGGACTTTGTGGAATATGAAAATGAACGAAATTCAGAAATGGCTGATAATAATGCTGATGGTTTGAGCCCCGTGAACATTGCAGAAACACCTACAAGCAAACAAGTTTCAAAGAGATCTCATGAATCTGCAGACCTCATTTCAATCGTTGATAACGATGGAAGTCAGACATCAAGTAGCAAAATCCCAAAGCTGGGAGACTTGAATGAAGTTGTAATGAAGTTGAAGGATGTTAAAAAGGAACCAACTGATTGA	1563	0.3519	MSKRVTYLPEIVSGRVDRKIRVKVIRLWNGTDFVDRSIKNTIEMVLVDEKGTRMQYNIKKALMASFENVFTERSGYLIQNIMVAHNDGRFKTSPHRFKLSFMANTRVQQINCDTFPSTTFVFVPFPQINHGRIPNNIADIVGHIVQKDDMKVTEKKGITTKRIELILEDLEKNHLGCTLWNDYAEEVESYLSNKHHTSSVVIVILQFCMIRTFNGNVGISSYYETSKMMLNAEVKEVEDYRSWLEASEVSITQVLSQPSTDTFLSESDDLMQTKRMAIAEIVESSEKFHASVMANVIEIDMARGWFYESCTHCFKKDQDIGGKWLCEGKNCMRIVNSVRRYMINLNVIDASGSTNFVIFDKVGLKLFGKSVGEMIKSKQFGFDDELPPEIDMLVDKVFVFKVEGDGGHSKFKQTFNIKYMTDDIEVVEKFRKKHFIKDFVEYENERNSEMADNNADGLSPVNIAETPTSKQVSKRSHESADLISIVDNDGSQTSSSKIPKLGDLNEVVMKLKDVKKEPTD.	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05697	520	CDD	RPA1_DBD_B_like	139	242	-	-
	Seca2g05697	520	Pfam	Domain of unknown function DUF223	43	137	IPR003871	-
	Seca2g05697	520	SUPERFAMILY	Nucleic acid-binding proteins	6	109	IPR012340	-
	Seca2g05697	520	CDD	RPA1_DBD_A_like	19	107	-	-
	Seca2g05697	520	MobiDBLite	consensus disorder prediction	451	470	-	-
	Seca2g05697	520	Pfam	Replication factor-A C terminal domain	291	401	IPR013955	-
	Seca2g05697	520	Gene3D	-	259	439	IPR012340	-
	Seca2g05697	520	CDD	RPA1_DBD_C	278	402	IPR047192	-
	Seca2g05697	520	Gene3D	-	3	110	IPR012340	-
	Seca2g05697	520	Gene3D	-	113	253	IPR012340	-
	Seca2g05697	520	PANTHER	OS03G0429900 PROTEIN	6	418	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Seca2g05697	520	SUPERFAMILY	Nucleic acid-binding proteins	122	250	IPR012340	-
	Seca2g05697	520	MobiDBLite	consensus disorder prediction	447	499	-	-
	Seca2g05697	520	MobiDBLite	consensus disorder prediction	485	499	-	-
	Seca2g05697	520	SUPERFAMILY	Nucleic acid-binding proteins	274	403	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05697	Seca-Chr2	143121697	143125109	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05697	46	368	Core DNA Replication Machinery Family	AT5G08020	23.547	1.02e-10	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05697	-		-	mtr:112422829	286.96