Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05687 ATGGCCAACGAAGAGGACAAAGGCAATGATTTGTATGAGGTTCTGGGGCTGAACAAGGAGTGCTCCAGATCAGAGCTTAGGAATGCTTACAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCGTCCGTCGTGGAAGAAGCTAAGAACAAATTCCAGGCAATCCAGCAAGCCTATTCTGTTTTATCTGATGCCAACAAAAGGTTCCTGTACGACGTAGGAGTCTATGACAGCGATGATGACCAAAACGGCATGGGTGACTTCATGAACGAAATGGCAACAATGATGAGCCAAACAAAACCCAGTGAAAATGGGGAGGAGAGCTTTGAGGAGTTGCAACAGCTTTTTAAAGAAATATTTCAAGCGGATAACGGGAGCACCTCTCATACTGCTGCCAGTGCCACCACTTGTTCTGTTTCATCTACATTCGTGACTTGTAGTGAAAGTTCTAATAATTCAAACAAACGCAATTCCACTGAGATAAATTTTGGGAAGGCAGATGATACTCCTCACTTCTATTCCAGCTACCAGAACTTCTGTTTAGGGGTTGGTCATGTAATTTACCATGAACAATTGAGGATACAAAACAAGGAAGTATGTGTCTGA 612 0.433 MANEEDKGNDLYEVLGLNKECSRSELRNAYKKLALKWHPDRCSASVVEEAKNKFQAIQQAYSVLSDANKRFLYDVGVYDSDDDQNGMGDFMNEMATMMSQTKPSENGEESFEELQQLFKEIFQADNGSTSHTAASATTCSVSSTFVTCSESSNNSNKRNSTEINFGKADDTPHFYSSYQNFCLGVGHVIYHEQLRIQNKEVCV. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05687 203 PANTHER PUTATIVE, EXPRESSED-RELATED 2 171 - -
Seca2g05687 203 Gene3D DnaJ domain 7 134 IPR036869 -
Seca2g05687 203 SUPERFAMILY Chaperone J-domain 9 90 IPR036869 -
Seca2g05687 203 CDD DnaJ 10 66 IPR001623 -
Seca2g05687 203 Coils Coil 47 67 - -
Seca2g05687 203 SMART dnaj_3 9 69 IPR001623 -
Seca2g05687 203 ProSiteProfiles dnaJ domain profile. 10 77 IPR001623 -
Seca2g05687 203 Pfam DnaJ domain 10 74 IPR001623 -
Seca2g05687 203 PRINTS DnaJ domain signature 49 69 IPR001623 -
Seca2g05687 203 PRINTS DnaJ domain signature 30 45 IPR001623 -
Seca2g05687 203 PRINTS DnaJ domain signature 12 30 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05687 Seca-Chr2 142992464 142995589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05687 12 74 C2H2 Transcription Factor Family AT1G74250 48.485 5.23e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05687 - - lang:109338829 262.307