Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05683 ATGGGAAAAGTTCATCCCCAAGCACTGCGTTCCTCAAATACTTGCAATTTCACTTCCAAACAAGAGACTTTCACCTTATGGATGAAATCTCTGGTACTGAATGGAAAGGGCTGCACCGTCTTTGACTCAAATGGCCAAATTGTGTATCGTGTTGATAACTACAGCTGCAAGTGTATAGATGAAGCTCATCTCATGGATCAAAAGGGTACTACCTTGTTTACTATAGTAAGAAAGCAATATAGTTTGCCCAGGTTTTGGGAGGGTTACAGATCCCCTGCCACAAGGAATGATCAGAGAGGACCAAGCTTTCGAATTTATAAAACTTACAGGATCTCTAGAGGGGTTTCAACTTATAAAGTTAAGCTTGGACTGGACAAAAATCAACCATATGCTCATAAAATAGAAAGCAGCACTAGCAAGTCAGCTTTCAAAATATCTGATCAGTTCGGAGTGCTAGTTGCAGAGTTAAGAAGGAAGAAATCAAGTTGCGGAGTTGATTTCGGAGATGATGTTTTGACAATGGTAGTGGAGCCAAATATAGATCTCTCTCTCATCATGGGGCTTGTGCAGCAACAGAACGACAGGCCCGATTCGTCGCTGTCCATCTCTCCTCCTCCGCTTGAAACCGAATCCTCAATGGGCGAAAACCCTAACCCTAAGATTTCCGCTTACTATCAGACGAGAGCGGCGCATCATGGTGTGGTGACCAGCGACTGGCTGGCTCAAGCTCAAGCTGCCATTGGCCAGGACTCTGAACCTGAACCTCACCCACAAGTTAGGGTCGATCCCGATAAACCCTTCAGCGTCATAGATGAATTTAATAACTGGCGGAAACAGCCCCATTTGGCCGAGGCCGTCGCCGCTATTCGCGCCTTGGCTGCCGTCATCATGTCCAGCCAGGCTTCCACCATGATGCAACTCGAAATTGAGCTCAAGAACGCCTCCGATTCTCTCAAAGAAATAGGTAATGTGCTCATTTTAGAATTATTGAATTTACTGATTCATTCTTTACTTGAATGTGCTCTGCAGTCCTGGGATACAACCTCTATCTCTTTGACAGCAGGTTGTGATCTGTTTATGCGATATGTGACTAGGACCTCTGCTTTAGAATATGAAGACTTCAATTCTGCAAAGTCTCGCCTAATTGAACGTGCCGACAAGTTTGGGGAAATCTCCTACAAGGCTCGGAAAATTATTGCAATGTTGAGTCAGGAATTTATATTTGATGGTTGTACAATTTTGGTTCATGGTTATTCCAGAGTTGTCTTTGAAGTTCTAAAACTGGCAGCACAAAATAAGAAACTGTTTCGCGTCTTCTGCACAGAGGGAAGACCAGACCGAACGGGATTACGGTTGTCCAATGAACTGGCCAAGCTTGATGTTCCGGTTAAACTTTTAATAGACTCCGCAGTTGCATATTCTATGGATGAGGTGGACATGGTTTTTGTGGGTGCAGATGGAGTTGTCGAAAGTGGGGGCATAATTAACATGATGGGGACATACCAAATTGCATTGGTTGCACATAGTATGAATAAACCAGTTTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGTCTTTACCCTCTTGACCAAAAGGATCTGGCCCCTGCCTTACGCCCTATTGATTTTGGGGTACCCATTCCGTCGAAGGTAGAGGTTGAAAGGTCTGCGCGGGACTACACCCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGCTGATCCAGCTATATTTATAG 1773 0.4439 MGKVHPQALRSSNTCNFTSKQETFTLWMKSLVLNGKGCTVFDSNGQIVYRVDNYSCKCIDEAHLMDQKGTTLFTIVRKQYSLPRFWEGYRSPATRNDQRGPSFRIYKTYRISRGVSTYKVKLGLDKNQPYAHKIESSTSKSAFKISDQFGVLVAELRRKKSSCGVDFGDDVLTMVVEPNIDLSLIMGLVQQQNDRPDSSLSISPPPLETESSMGENPNPKISAYYQTRAAHHGVVTSDWLAQAQAAIGQDSEPEPHPQVRVDPDKPFSVIDEFNNWRKQPHLAEAVAAIRALAAVIMSSQASTMMQLEIELKNASDSLKEIGNVLILELLNLLIHSLLECALQSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERADKFGEISYKARKIIAMLSQEFIFDGCTILVHGYSRVVFEVLKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05683 590 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 231 590 - -
Seca2g05683 590 Coils Coil 304 324 - -
Seca2g05683 590 Gene3D - 15 193 IPR038595 -
Seca2g05683 590 SUPERFAMILY Tubby C-terminal domain-like 18 189 IPR025659 -
Seca2g05683 590 Pfam Initiation factor 2 subunit family 283 578 IPR000649 GO:0044237
Seca2g05683 590 SUPERFAMILY NagB/RpiA/CoA transferase-like 250 589 IPR037171 -
Seca2g05683 590 Gene3D - 266 391 IPR042528 -
Seca2g05683 590 Pfam LURP-one-related 18 189 IPR007612 -
Seca2g05683 590 FunFam Translation initiation factor eIF-2B subunit alpha 265 391 - -
Seca2g05683 590 Gene3D - 394 590 IPR042529 -
Seca2g05683 590 MobiDBLite consensus disorder prediction 194 218 - -
Seca2g05683 590 FunFam Translation initiation factor eIF-2B subunit alpha 394 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05683 Seca-Chr2 142972738 142978343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05683 188 590 Eukaryotic Initiation Factors Gene Family AT1G53880 75.000 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05683 K03239 - rcu:8276560 792.727