Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05678 ATGGATGATACCCTCTACGATGTTGAAAAGGCCAAAGAAGACCTCAAACACTACCCATCAAAAAAGTCTCCCTATCAGTATGCGGATGACCTTAAAACAGTCATCAGTTCCGCTATCACCAACCAGCTTACTTGCTTGGATGGCTTCTCTCACGAGAATGTCGAGAAGCACTTCAGGAAATCATATCTGGAGGCAGGGCAAGTGCATGTGGAGCACCTGTGCAGCAACGCATTGGACATAGCTAATTACCAGAACAACAGGAAACGACTGATGGAGCAGGAGGAGGATGGGATCAAGTGGCCTCAGTGGATTTCCGCCTCGGACAGGCGTCTTCTACAGGCGGATTCAGTGACTCCTAACGTGGTGGTGGCGGCGGACGGCAGCGGGAACTACAGGACAGTGTCAGCTGCGGTGGCTGCAGCTCCAGAGAAGAGTAGCAAGAGATATGTAATTAGGATAAAAGCAGGAGTGTACAGAGAGAATGTGGATGTGCCAAGGACGAAGACGAATATCATGTTCGTGGGTGATGGCAATCAAAACACAATCATCACAGCCAGTAGAAATGTGGTTGACGGTAGCACAACTTTTAATTCTGCCACAGTCGCTGTAGTGGGTGAAAGATTCTTGGCACGAGGAGTAACCTTCCAGAACGCAGCAGGGCCTTCAAAGCACCAAGCGGTGGCCTTGCGAGTTGGAGCTGACCTGGCAGCGTTCTATAAGTGCGGCTTCATAGCATACCAAGACACCCTTTATGTCCACAGCAACCGTCAATTCTTCGTCAAGTGCTACATAGCAGGATCTGTGGACTTTATCTTTGGCAACTCAGCTGCTGTGCTCCAAGACTGTGACATCCGCGCCAGGCGTCCCAATCCAAGCCAAAAGAACATGGTCACCGCACAAGGACGCACTGACCCCAATCAAAACACAGGCATTGTCATCCAAAAATGTAGGATTGGTGCCACCTTCCAAACGTATTTAGGGAGACCATGGAAGGAGTACTCTAGGACTGTCGTCATGCAATCAACCATAAGTAATGTGATTCATCCAGCTGGGTGGTTTGAGTGGGATGGGAATTTTGCCTTGAACACGTTGTATTATGGAGAGTATCAGAACAGTGGGGCTGGTGCGGACACCTCTAAGAGGGTTAAATGGAAAGGGTTTAAGGTCATTACAAGTGCTTCTGAGGCACAGGCGTTTACTCCTGGGAGTTTCATTGCAGGTTCCAGCTGGTTGCCTTCTACTGGCTTCCCTTACTCTCTTGGGCTGTAG 1269 0.4949 MDDTLYDVEKAKEDLKHYPSKKSPYQYADDLKTVISSAITNQLTCLDGFSHENVEKHFRKSYLEAGQVHVEHLCSNALDIANYQNNRKRLMEQEEDGIKWPQWISASDRRLLQADSVTPNVVVAADGSGNYRTVSAAVAAAPEKSSKRYVIRIKAGVYRENVDVPRTKTNIMFVGDGNQNTIITASRNVVDGSTTFNSATVAVVGERFLARGVTFQNAAGPSKHQAVALRVGADLAAFYKCGFIAYQDTLYVHSNRQFFVKCYIAGSVDFIFGNSAAVLQDCDIRARRPNPSQKNMVTAQGRTDPNQNTGIVIQKCRIGATFQTYLGRPWKEYSRTVVMQSTISNVIHPAGWFEWDGNFALNTLYYGEYQNSGAGADTSKRVKWKGFKVITSASEAQAFTPGSFIAGSSWLPSTGFPYSLGL. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05678 422 CDD PMEI-like_3 1 82 - -
Seca2g05678 422 ProSitePatterns Pectinesterase signature 2. 264 273 IPR033131 -
Seca2g05678 422 PANTHER PECTINESTERASE 2 412 - -
Seca2g05678 422 ProSitePatterns Pectinesterase signature 1. 145 164 IPR018040 -
Seca2g05678 422 Pfam Pectinesterase 120 407 IPR000070 GO:0030599|GO:0042545
Seca2g05678 422 Pfam Plant invertase/pectin methylesterase inhibitor 1 80 IPR006501 GO:0004857
Seca2g05678 422 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 83 IPR035513 -
Seca2g05678 422 FunFam Pectinesterase 114 422 - -
Seca2g05678 422 Gene3D - 114 422 IPR012334 -
Seca2g05678 422 SUPERFAMILY Pectin lyase-like 118 421 IPR011050 -
Seca2g05678 422 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 84 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05678 Seca-Chr2 142942140 142943541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05678 1 422 Carbohydrate Esterase AT3G14310 66.087 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05678 K01051 - rcu:8276562 652.899