Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05677 ATGAGCGAAATGAGAGAAGCCTTAATCTCTGATTCCCAGTCCAACAAGAATATTAACAAGAAACTCTTGTTGGCTGGTTTCCTCTTTGTGGCCGCTGTTGTAGGCATTTTTGTGGCATCCTCCAACAAGTACTACAATATAATTAATGCTCAGTCCTCCTCCTCTCTGTCCCCTTCTTCCCATGCCATTCTCCAAAGCGCTTGCAGCAGCACTCTGTACCCAAAACTATGCTTTTCATCCATAACTAGAGCTTCTCAAGATCAGAATTTAGTAATTAGCAGTCACAGAGATGTGATACAGCTGGCCTTGAACATCACCTCCAGAATTGCTGAGCGCAATTACTTCACCATCCAGAGGCTCTTAACTACCGGAGATGTGAAACTGAAAACCGCCCTCCACGATTGCTTGCAAACCACTGATGCGACCCTCTATCATCTTGACAAGGTGAAGCAAGATCTCAAACATTACCCATCCAATTACAAGTCTCTGTATCGGCATGCTCATGACCTTAAAACATGGTTAAGCTCTGCCATCACAAACCAAGTTACTTGCTTGGACAGCTTCTCTGATATTTTTGATCCTCGTCTAAGGAAATCATATTCATATGTGGAGGAAGAGCAACAGCATGTGCAGCACTTGTGCAGTAACGCATTGGCTATGATCAAGAACCTCACTGATACCGACATAGCTAATTACGAGAAGAACAACAACAAGAACAACATCAACATGGTGGTGGATGAAGAGAAGGATGGAATCAAGTGGCCGGAGTGGATTTCCGGCGATGACAGGCGGCTTCTGACGGCGTATACTCTGACTGCTAACGTGGTGGTGGCAGCAGACGGCAGCGGGGACTACACGACAGTATCAGCTGCGGTGGCTGCAGCTCCCAAAAAGATCAGTAGCAGCAGCAATAGATATATAATTAAAATAAAAGCAGGAGTGTACAGAGAGAATGTAATTGTACCAAAGGAGAAGCCTTACCTCATGTTCTGGGGAGAAGGTAGTGATAAAACTATGATCACAGCAAGTAAAAATAATGTTGATGACGGTTCAACTTATAACTCTGCCACAGTAGCTGTAGATGGTGAAGGATTCTTGGCACAAGGGATAACCATCCAGAATGCAGCAGGTGCTATAAAGATGCAAGCTGTGGCCCTACGAGTTGGTGCTGACTACTCAGCGTTCTATAAGTGCAGCTTCACAGGACACCAAGACACCCTTTATGTTCACAGCAATCGTCAATTCTTTGTCAAGTGCTTCATTGCAGGCACTGTGGACTTCATCTTTGGCAACTCAGCTGTTGTGTTCCAAGACTGTGACATCAAACCCACGGTTGCCCTTTCAGGGCAACAGAACATGGTGACCGCACAAGGACGCACAGAGGCTAACCAGAACACAGGAATTGTGATCCAAAAATGTAGGATTGATGCCACCAAAGAATTGCAAGCTCAATTGGACAGCTTCACTTCGTATTTAGGGAGGCCATGGCAGGAGTATTCTAGGACTGTGGTCATGCAATCCACAATAAGTAATGTGATCGACCCTGCTGGGTGGCATCCCTGGAACGAGTCTGATTTTGCATTGAATACATTGTATTATGGAGAGTATCAGAACAGTGGGGCTGGTGCGGACACCTCTAAGAGGGTTACCTGGAAAGCTGTAGATGGTGAAGGATTCTTGGCACAAGGGATAACCATCCAGAATGCAGCAGGTGCTATAAAGGAGCAAGCTGTGGCCCTACGAGTTAGTTCTGACACAGCTGCGTTCTATAAGTGCAGCTTCTTAGGACACCAAGACACCCTTTATGTTGACAGCAATCGCCAATTCTTTGTCAAGTGCATCATCGTAGGCACTGTGGACTTCATCTTTGGCAACTCAGCTGTTGTGTTCCAAGACTGTGACATCAAACTTACGCTTCCCCTTTTAGGGCAACAGAACATGGTGACCGCACAAGGACGCACTGAGGCGAACCTTATGCATGTCACCGGAATTGTGATCCAAAATTGTAGGATTGATGCCACCAAGGAATTGCAAGCTCAATTGCACAGAGTCACTTCTTATTTAGGGAGGCCATGGAAGGAGTATTCTACGACTGTGGTCATGCAATCCACAATAAGTAATGTGATCGACCCTGCTGGGTGGCATTCTTGGAATGAAACTGATTTTGCGTTGAATACATTGTATTATGGAGAGTATCAGAACAGTGGGGCTGGTGCTGACACCTCTAAGAGGGTTAAATGGAAAGGGTTTAAGGTCATTACAAGTGCTTTGGAGGCACGGGCTTTTACTCCTGGGAGTTTCATTGGTGGTGGGAGCTGGTTGCCTTCTACAGGCTTCCCTTACTCTCTTGGGCTGTAG 2358 0.4597 MSEMREALISDSQSNKNINKKLLLAGFLFVAAVVGIFVASSNKYYNIINAQSSSSLSPSSHAILQSACSSTLYPKLCFSSITRASQDQNLVISSHRDVIQLALNITSRIAERNYFTIQRLLTTGDVKLKTALHDCLQTTDATLYHLDKVKQDLKHYPSNYKSLYRHAHDLKTWLSSAITNQVTCLDSFSDIFDPRLRKSYSYVEEEQQHVQHLCSNALAMIKNLTDTDIANYEKNNNKNNINMVVDEEKDGIKWPEWISGDDRRLLTAYTLTANVVVAADGSGDYTTVSAAVAAAPKKISSSSNRYIIKIKAGVYRENVIVPKEKPYLMFWGEGSDKTMITASKNNVDDGSTYNSATVAVDGEGFLAQGITIQNAAGAIKMQAVALRVGADYSAFYKCSFTGHQDTLYVHSNRQFFVKCFIAGTVDFIFGNSAVVFQDCDIKPTVALSGQQNMVTAQGRTEANQNTGIVIQKCRIDATKELQAQLDSFTSYLGRPWQEYSRTVVMQSTISNVIDPAGWHPWNESDFALNTLYYGEYQNSGAGADTSKRVTWKAVDGEGFLAQGITIQNAAGAIKEQAVALRVSSDTAAFYKCSFLGHQDTLYVDSNRQFFVKCIIVGTVDFIFGNSAVVFQDCDIKLTLPLLGQQNMVTAQGRTEANLMHVTGIVIQNCRIDATKELQAQLHRVTSYLGRPWKEYSTTVVMQSTISNVIDPAGWHSWNETDFALNTLYYGEYQNSGAGADTSKRVKWKGFKVITSALEARAFTPGSFIGGGSWLPSTGFPYSLGL. 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05677 785 CDD PMEI-like_3 66 225 - -
Seca2g05677 785 NCBIfam pectinesterase inhibitor domain 49 225 IPR006501 GO:0004857
Seca2g05677 785 SUPERFAMILY Pectin lyase-like 270 552 IPR011050 -
Seca2g05677 785 FunFam Pectinesterase 554 785 - -
Seca2g05677 785 SMART PMEI_2 59 220 IPR006501 GO:0004857
Seca2g05677 785 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 225 IPR035513 -
Seca2g05677 785 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Seca2g05677 785 Pfam Pectinesterase 274 553 IPR000070 GO:0030599|GO:0042545
Seca2g05677 785 Pfam Plant invertase/pectin methylesterase inhibitor 64 220 IPR006501 GO:0004857
Seca2g05677 785 Gene3D - 555 785 IPR012334 -
Seca2g05677 785 Gene3D - 268 554 IPR012334 -
Seca2g05677 785 FunFam Pectinesterase 60 225 - -
Seca2g05677 785 ProSitePatterns Pectinesterase signature 2. 615 624 IPR033131 -
Seca2g05677 785 SUPERFAMILY Pectin lyase-like 554 784 IPR011050 -
Seca2g05677 785 PANTHER PECTINESTERASE 33 553 - -
Seca2g05677 785 FunFam Pectinesterase 268 553 - -
Seca2g05677 785 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 226 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05677 Seca-Chr2 142919384 142928487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05677 542 785 Carbohydrate Esterase AT1G53830 63.525 4.53e-95 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05677 K01051 - gmx:100776623 581.637