Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g05672 | ATGAGTGACTCGTCGTTGGCAAGTGACAATTTGGGTGATTCCCCAGCGGTTGAGTTAACCGGCAAGATTATGGTGGCGGCTATAATTGTCCTATTCATGGTTGTTGTATGTGCTGTGGCCTTCCATCTCTTTGCCAGAGGCTACTGGTGGCGCATTGGAGACAGTATTGCTCCGCAATCCCGCCGCCGCCGCCGCTTTTCCTTTAACTCCGGTCAAGATAGTGCTCTTCGAGCTGGCCTTGATCCTTCTGTCCTAAGGTCCCTACCCGTACTGGTGTTCCAACCCCAAGACTTCAAGGATGGTTTAGAATGTGCTGTTTGTCTCTCTGAACTTGTTGAAGGAGAAAAGGCTAGACTTTTACCCAAATGCAATCATGGGTTTCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCTACCTGCCCTATATGCAGGAACCCTGTTGGCTCCAAATCCGGTATAAGTACTAGTGCCTCGGAGAATATTGAATCATCATCAGGTGCAGAAAGTTCAGCTGACGTAAGTGGCTTAGAAACTCCAATTTTTCCTACAAATGTGTTGATTTGGGGGAACCAGACCCAAATAAGTTCTACTGGTGATTCTTTGGAAGAAAGTACTTCTCAGCCACCTTGCTCCTCCTCATCCTCTTCGGCGGGTAGTTGTAGTGATAATAATGGAAGGCTAGTGATTGATATACCAAATGAGATCACTTCATCCTCTTTATCACCTTCTGTTAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATTACAGGGAGACTGAGGTCATTGAAGAGACTTCTAAGCAGGGACAGAAGGCTAAATCCTTGGAGTCCAACTTCTACTGATTTGGAACAAGCAAGGGGAGGACAGAGCTAG | 882 | 0.4649 | MSDSSLASDNLGDSPAVELTGKIMVAAIIVLFMVVVCAVAFHLFARGYWWRIGDSIAPQSRRRRRFSFNSGQDSALRAGLDPSVLRSLPVLVFQPQDFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPICRNPVGSKSGISTSASENIESSSGAESSADVSGLETPIFPTNVLIWGNQTQISSTGDSLEESTSQPPCSSSSSSAGSCSDNNGRLVIDIPNEITSSSLSPSVSRFAEDELKSPITGRLRSLKRLLSRDRRLNPWSPTSTDLEQARGGQS. | 294 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g05672 | 293 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 154 | IPR013083 | - | |
Seca2g05672 | 293 | SMART | ring_2 | 104 | 145 | IPR001841 | - | |
Seca2g05672 | 293 | MobiDBLite | consensus disorder prediction | 156 | 176 | - | - | |
Seca2g05672 | 293 | SUPERFAMILY | RING/U-box | 84 | 152 | - | - | |
Seca2g05672 | 293 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 22 | 189 | - | - | |
Seca2g05672 | 293 | MobiDBLite | consensus disorder prediction | 198 | 225 | - | - | |
Seca2g05672 | 293 | MobiDBLite | consensus disorder prediction | 156 | 174 | - | - | |
Seca2g05672 | 293 | MobiDBLite | consensus disorder prediction | 275 | 293 | - | - | |
Seca2g05672 | 293 | CDD | RING-H2_EL5-like | 103 | 146 | - | - | |
Seca2g05672 | 293 | Pfam | Ring finger domain | 103 | 146 | IPR001841 | - | |
Seca2g05672 | 293 | MobiDBLite | consensus disorder prediction | 273 | 293 | - | - | |
Seca2g05672 | 293 | FunFam | RING-H2 finger protein ATL3 | 72 | 151 | - | - | |
Seca2g05672 | 293 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g05672 | Seca-Chr2 | 142893742 | 142894623 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g05672 | 1 | 276 | C3H Transcription Factor Family | AT1G53820 | 41.613 | 2.55e-67 | 210 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g05672 | - | - | adu:107491762 | 323.553 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g05672 | 2 | 142893742 | 142894623 | Seca2g05672 | 2 | 142893742 | 142894623 | ECH |