Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05672 ATGAGTGACTCGTCGTTGGCAAGTGACAATTTGGGTGATTCCCCAGCGGTTGAGTTAACCGGCAAGATTATGGTGGCGGCTATAATTGTCCTATTCATGGTTGTTGTATGTGCTGTGGCCTTCCATCTCTTTGCCAGAGGCTACTGGTGGCGCATTGGAGACAGTATTGCTCCGCAATCCCGCCGCCGCCGCCGCTTTTCCTTTAACTCCGGTCAAGATAGTGCTCTTCGAGCTGGCCTTGATCCTTCTGTCCTAAGGTCCCTACCCGTACTGGTGTTCCAACCCCAAGACTTCAAGGATGGTTTAGAATGTGCTGTTTGTCTCTCTGAACTTGTTGAAGGAGAAAAGGCTAGACTTTTACCCAAATGCAATCATGGGTTTCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCTACCTGCCCTATATGCAGGAACCCTGTTGGCTCCAAATCCGGTATAAGTACTAGTGCCTCGGAGAATATTGAATCATCATCAGGTGCAGAAAGTTCAGCTGACGTAAGTGGCTTAGAAACTCCAATTTTTCCTACAAATGTGTTGATTTGGGGGAACCAGACCCAAATAAGTTCTACTGGTGATTCTTTGGAAGAAAGTACTTCTCAGCCACCTTGCTCCTCCTCATCCTCTTCGGCGGGTAGTTGTAGTGATAATAATGGAAGGCTAGTGATTGATATACCAAATGAGATCACTTCATCCTCTTTATCACCTTCTGTTAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATTACAGGGAGACTGAGGTCATTGAAGAGACTTCTAAGCAGGGACAGAAGGCTAAATCCTTGGAGTCCAACTTCTACTGATTTGGAACAAGCAAGGGGAGGACAGAGCTAG 882 0.4649 MSDSSLASDNLGDSPAVELTGKIMVAAIIVLFMVVVCAVAFHLFARGYWWRIGDSIAPQSRRRRRFSFNSGQDSALRAGLDPSVLRSLPVLVFQPQDFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPICRNPVGSKSGISTSASENIESSSGAESSADVSGLETPIFPTNVLIWGNQTQISSTGDSLEESTSQPPCSSSSSSAGSCSDNNGRLVIDIPNEITSSSLSPSVSRFAEDELKSPITGRLRSLKRLLSRDRRLNPWSPTSTDLEQARGGQS. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05672 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 154 IPR013083 -
Seca2g05672 293 SMART ring_2 104 145 IPR001841 -
Seca2g05672 293 MobiDBLite consensus disorder prediction 156 176 - -
Seca2g05672 293 SUPERFAMILY RING/U-box 84 152 - -
Seca2g05672 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 189 - -
Seca2g05672 293 MobiDBLite consensus disorder prediction 198 225 - -
Seca2g05672 293 MobiDBLite consensus disorder prediction 156 174 - -
Seca2g05672 293 MobiDBLite consensus disorder prediction 275 293 - -
Seca2g05672 293 CDD RING-H2_EL5-like 103 146 - -
Seca2g05672 293 Pfam Ring finger domain 103 146 IPR001841 -
Seca2g05672 293 MobiDBLite consensus disorder prediction 273 293 - -
Seca2g05672 293 FunFam RING-H2 finger protein ATL3 72 151 - -
Seca2g05672 293 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05672 Seca-Chr2 142893742 142894623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05672 1 276 C3H Transcription Factor Family AT1G53820 41.613 2.55e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05672 - - adu:107491762 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05672 2 142893742 142894623 Seca2g05672 2 142893742 142894623 ECH