Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05671 ATGATGATCACCATCCTCATCATCTTCCTAGTCACAGCAGCTACAGCCATTGTTGTTGTGATCTCAAAGTACTCCTTTAAAAAATATACAATATTCCAAAGCTTATTGCATAAACTACTGTATTATTATAAGAGTAATGGTGATGCAGGGAAGGAGAATGTTTCAGAAGAAGAAGATTGGTGTGCAGTGTGTCTATGCCAAGTGTCAGAGGGAGGAAAGGTACAGTCACTACCTGGATGCTACCACAGTTTTCATGCTGACTGTATTGGTGCCTGGTTGAAGGAACACAACAGCTGCCCTCTTTGTAGGAACAAAATCAATGACCATCATATCCCCTACAATCACAAAGTCAATATCATTGATTTGTTTCAGAGTTTCTCTGATCTATTCATAGCTCTTATCTACATCACGCTTCCACCTAGCATCCGTCAGACTTTCCCTTTGCTCACTCAAACTCAATATTGA 465 0.4 MMITILIIFLVTAATAIVVVISKYSFKKYTIFQSLLHKLLYYYKSNGDAGKENVSEEEDWCAVCLCQVSEGGKVQSLPGCYHSFHADCIGAWLKEHNSCPLCRNKINDHHIPYNHKVNIIDLFQSFSDLFIALIYITLPPSIRQTFPLLTQTQY. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05671 154 SMART ring_2 61 102 IPR001841 -
Seca2g05671 154 Pfam Ring finger domain 60 103 IPR001841 -
Seca2g05671 154 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Seca2g05671 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 109 IPR013083 -
Seca2g05671 154 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 33 107 IPR044675 -
Seca2g05671 154 SUPERFAMILY RING/U-box 54 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05671 Seca-Chr2 142882995 142883459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05671 25 106 C3H Transcription Factor Family AT3G18930 39.080 4.87e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05671 - - gmx:100500375 126.331