Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05667 ATGGCAAAGAAAGTCAATGATTTATGTGGTATCAAAGAGTCTGACACTGGTTTGGCTGCTCCAAGCCAGTGGGACCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCACTAAGATTATAAATCCAAATTCCGAAGATGCCAAATATGTTATCAATGTGAAGCAGATCGCAAAGTTTGTTGTTGGGCTGGGTGACAAAGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGGGTTGATCGAAACAAATATCAGATTCAGATTCCATTGCCCCCAAAAATTGACCCAAGTGTTACAATGATGACAGTTGAAGAGAAACCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTTCCCATGCTCCACCCAGAGAAATTTGTTAAGCTTGGAATTGATCCTCCAAAGGGCGTTCTTTGCTATGGTCCACCAGGGACTGGCAAAACACTTTTAGCTAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGGGTCATAGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGGATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAGCGCACAATGCTTGAAATTGTGAATCAACTTGATGGGTTTGATGCTCGAGGAAACATTAAAGTCTTGATGGCAACTAACAGGCCTGACACTCTAGATCCAGCACTACTACGGCCAGGACGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGATTTGGAAAGTAGGACTCAAATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCTAATTCCACTGGAGCCGATATAAGGAGTGTTTGTACTGAAGCTGGTATGTATGCTATTCGAGCCCGAAGGAAGACTGTAACGGAAAAAGATTTCCTTGATGCAGTTAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCAACTCCCAAGTATATGGTCTACAACTGA 1140 0.4316 MAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05667 379 Gene3D - 18 110 IPR012340 -
Seca2g05667 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 369 IPR027417 -
Seca2g05667 379 Gene3D - 111 290 IPR027417 -
Seca2g05667 379 Pfam AAA+ lid domain 313 356 IPR041569 -
Seca2g05667 379 FunFam 26S protease regulatory subunit 7 292 363 - -
Seca2g05667 379 Pfam ATPase family associated with various cellular activities (AAA) 158 290 IPR003959 GO:0005524|GO:0016887
Seca2g05667 379 ProSitePatterns AAA-protein family signature. 261 279 IPR003960 GO:0005524|GO:0016887
Seca2g05667 379 SMART AAA_5 154 293 IPR003593 GO:0016887
Seca2g05667 379 FunFam 26S protease regulatory subunit 7 1 110 - -
Seca2g05667 379 CDD RecA-like_PAN_like 119 289 - -
Seca2g05667 379 Gene3D - 292 374 - -
Seca2g05667 379 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 11 365 - -
Seca2g05667 379 FunFam 26S protease regulatory subunit 7 111 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05667 Seca-Chr2 142853799 142858381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05667 123 344 Calmodulin-binding Proteins AT3G56690 37.220 4.48e-42 155