Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05659 ATGACAATGATGAGCAGCAACAAAAACAACGTTGGACAGTTTGGAGATACAACGCTGACCAAAGTGTTTGTGGGAGGGCTAGCGTGGGAAACCCCGAAAGAAACATTGAGAGAGCACTTTGAAAAGTTCGGTGAGATCCTTGAAGCCGTCATCATTTCTGATAAGCTCACCGGCAGATCCAAAGGCTACGGCTTTGTAACGTTCAAGGAAGCAGAGGCGGCGAAGAAGGCTTGCGAGGAACCAACTCTGATTATCAATGGGCGCCGAGCCAACTGCAATCTGGCATCGCTGGGTGCACGCCGTCCAACCAGGTCGTCCTCTTCCCCTCAGACACAAGGAACGAGGATTAATGCCAACCAGGTTCAGTGGTATTATCCCGTGGCAACACCTGCACCTGCTTCCCCATTCCATCATCACGCCTTTCCTTTCTACGGGTACACGCCCACTTACATTGCAGCAGACGTAAATTACAATTACAATCAGTGTTTCATGCAGAAGGTGAACTATGGAAGTGGCTACGGGTACATGAATGGGCATGTGTACCCAAACCCTGCAAGCCAGGCACAGGCAATTGTGGGCGCAAATACATTGATGCCAATGTCAATGTACCCTGCAGTCTACCACTTCCACCGAACCGAGACAATGGGCGTACCTGCTGCCCACTTCTTCCACCCAACCATACCCATCACTCCCTCAGGTCCAGTTGGCACGGGTGAATGCTTCAAAAGGGTGGTCTGA 738 0.5108 MTMMSSNKNNVGQFGDTTLTKVFVGGLAWETPKETLREHFEKFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEPTLIINGRRANCNLASLGARRPTRSSSSPQTQGTRINANQVQWYYPVATPAPASPFHHHAFPFYGYTPTYIAADVNYNYNQCFMQKVNYGSGYGYMNGHVYPNPASQAQAIVGANTLMPMSMYPAVYHFHRTETMGVPAAHFFHPTIPITPSGPVGTGECFKRVV. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05659 245 FunFam Putative RNA-binding protein ARP1 14 102 - -
Seca2g05659 245 SUPERFAMILY RNA-binding domain, RBD 16 114 IPR035979 GO:0003676
Seca2g05659 245 SMART rrm1_1 21 93 IPR000504 GO:0003723
Seca2g05659 245 PANTHER BOULE-RELATED 8 214 - -
Seca2g05659 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 88 IPR000504 GO:0003723
Seca2g05659 245 Gene3D - 3 114 IPR012677 -
Seca2g05659 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05659 Seca-Chr2 142803935 142806353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05659 16 184 C2H2 Transcription Factor Family AT2G19380 32.632 2.27e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05659 - - gmx:100813699 285.804