Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05657 ATGCTATGCAATTCCCAAATCAGATTGGCTCATGTGACCCATATGTCTGTTTCTCCTAAAGACTCCATTTTTTCCTTCTGGGGATCTGTTCTAATGACACAGGGAACTCCCAGTCACAGTTGCAGACAAAGACCCTCTTCCTCTTCCATGTTCATAATATTGTTAGTCCTGTCTTGGTTCCTGGTTCTTGTTGAAGCCTCCTCATGTAACCAATTGGATAGAGACTCGCTCTTGGCCTTCTCCATGAGCATATCCCCTCCTCTCAATTGGTCTTTTTCTGTTGATTGCTGCCTTTGGGAAGGTATTCTTTGTGAAGAGGACCAACACAATGTCAATGGGGATCTCAGAGTCACTCGTCTATTGCTACCATCCAGAGGTCTCACTGGCTTTATCTTCCCATCTCTTACAAACCTCACTGCTCTCTCTCACCTTAATCTCTCCCATAATCGGTTATCTGGTAATCTCCCAAACCAATTTTTCTCACTTCTTAACCACTTGCAAATTCTTGATTTAAGCAACAATCGTCTCTCTGGTGAATTGCCACTCTTTCTTGTTAATAACAGTAACAGTGCTAGGACTAGTTTCATCCAGGAGTTTGATTTGTCTAGTAATTTATTCAACGGAACACTCCCAGATTCTCTCCTTCACCACCTGGCAGCTGCAGCCACAGGGGGGAGTTTGACATCTTTTAATGTTAGTAACAATAGCTTCACCGGTCAAATTCCCACTTCTCTTCTCTGCAGTAATGACAATAACTCATCCTCTATCAGATTCTTGGATTATTCCTTCAACCATTTCAGTGGCATGGTTCTTCCTGGACTAGGAGCATGTTCCAAGCTGGAGAAATTTCGAGCAGGTTTCAACTTACTATCCGGGCCTCTTCCCAGTGATATTCTTTATGCTGTTGCACTCACAGAACTCTCCTTGCCCCTCAATGAACTCAGTGGAACCATTGGCGATGCCATTGTTAGTCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACAGGGCCTATTCCCATGGATATTGGTAAGCTCTCCAAATTGGAACGGCTAGTCCTTCGCGCCAACAATCTGACTGGTACTCTGCCCCCATCTCTGATGAACTGTGTCAATCTTGTCATGTTGGATTTAAGGATCAACTCCTTGAAGGGAAATCTCTCAGCATTCAATTTCTCTGGACTCCTCAGGCTCACTACACTTGACCTTGGCAACAATAACTTCACAGGTATTTTACCACCAACCCTTTATGCATGCAAGTCACTTAAGGCAGTAAGGCTAGCATCTAATCAGCTTGAAGGACAGATCTCACCTGACATACTTGGACTTCATTCTCTGGCTTTCCTATCAGTCTCTACCAACAAATTGACTAATGTCACTGGGGCTCTGAGGATACTCATGCGGCTCAAGAACCTTAGTACACTTATGCTCTCCCAGAATTTTTTTGGTGAAATGATGCCAAGTGATGCAAACATAATAGACTCAGATGGATTCCAAAAAATCCAGGTTCTAGGGTTGGGTGCTTGTAAATTCACAGGCCAAATCCCTGGTTGGCTTGTTAATCTGAAGAAGCTTGAGGTCTTGGATCTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTAGGCACACTTCCTCAGCTTTTCTACATAGACTTATCTTTTAACCTCCTTACAGGAAAATTTCCTATGGAGCTCACAAGGCTTACAGCACTAACATCTCAACAGGCATATGATGAAGTGGAAAGGACTTACCTGGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCCCAGATGCAATATAACCAGCTTTCGAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAATGACAGTATCCCCATAGAGATTGGCCTGCTGAAAGTCCTTCATCAGCTGGACCTTAGTTGTAACCAATTCTCTGGCAATATCCCAGTTCAAATTTCTAACTTGACTAACTTAGAGAAACTATACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGTTTCACTCACTAATTTGCATTTTTTATCTGTTTTCAATGTGGCACACAATGATCTTCAGGGACAGATACCAACCGGTGGTCAATTTGATACTTTCACTGCCTCCAGCTTTGAAGGAAACCCCAAGTTGTGTGGTTCAGTTGTTCAGCGATCTTGTCTTCCTCAAAATGCTAGGACTGCAGGTGGTCACAGTTCAAGGAAAAAACTAATAATTGGATTTGTCATTGCAGCATGTTTTGGCACAGTTTCCTTCATTTCAGTGTTGATAGTGTGGATACTGTCCAAGAGGAGGATCAGTCCAGGAGGAGACTCTGACGAGATTGAATCAGAAACAATTTTTGCCAGCTCTGACGGAGGGCTACATCTTGAGGTTGACAAAGAGGCTAGCCTAGTGGTATTGTTCCCTAATAAAACAAATGAAATCAAGGATCTTACCATAGTTGAAATATTAAAAGCCACTGAATATTTCAGTCATGAAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACTTTACCAGATGGAACTACTCTAGCCATCAAGAAACTTTCAGGAGATATGGGTCTCATGGAAAGGGAATTTAAAGCAGAGGTAGAGACTTTGTCTACAGCACAACATGAGAATCTGGTTGCATTGCAAGGCTATTGTGTTCATGAGGGCTTTAGGCTTCTCATATATAGTTACATGGAAAATGGAAGTCTGGATTACTGGTTACATGAAAAGGATGATGGTCCATCTCAAATTGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCATCAGATATGTGAACCACACATAGTGCACCGTGATATAAAGTCAAGCAATATACTCCTTGATGAGAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGGCCCGATTGATTCTTCCTTATCAAACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCGGAATATGGGCAGGCATGGGTGGCAACTATGAGAGGAGATGTCTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGGCCTGTTGATGTGTCCAAGCCAAAAATGTCAGGAGAGTTGGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGGAAACAAGATCAAGTCTTTGACCCTCTCTTGAGAGGGAAGGGCTTTGAAGAAGGGATGCTGCAGGTTCTTGATGTGGCCTGCATGTGTGTCAACCTGAATCCTCTTAAGAGACCAACCATCAGAGAAGTTGTTGAATGGCTAAAGAATGTAGGATCATCCAACTAA 3333 0.4278 MLCNSQIRLAHVTHMSVSPKDSIFSFWGSVLMTQGTPSHSCRQRPSSSSMFIILLVLSWFLVLVEASSCNQLDRDSLLAFSMSISPPLNWSFSVDCCLWEGILCEEDQHNVNGDLRVTRLLLPSRGLTGFIFPSLTNLTALSHLNLSHNRLSGNLPNQFFSLLNHLQILDLSNNRLSGELPLFLVNNSNSARTSFIQEFDLSSNLFNGTLPDSLLHHLAAAATGGSLTSFNVSNNSFTGQIPTSLLCSNDNNSSSIRFLDYSFNHFSGMVLPGLGACSKLEKFRAGFNLLSGPLPSDILYAVALTELSLPLNELSGTIGDAIVSLTNLTVLELYSNNFTGPIPMDIGKLSKLERLVLRANNLTGTLPPSLMNCVNLVMLDLRINSLKGNLSAFNFSGLLRLTTLDLGNNNFTGILPPTLYACKSLKAVRLASNQLEGQISPDILGLHSLAFLSVSTNKLTNVTGALRILMRLKNLSTLMLSQNFFGEMMPSDANIIDSDGFQKIQVLGLGACKFTGQIPGWLVNLKKLEVLDLSYNQISGSIPPWLGTLPQLFYIDLSFNLLTGKFPMELTRLTALTSQQAYDEVERTYLELPVFANANNVSQMQYNQLSNLPPAIYLGNNSLNDSIPIEIGLLKVLHQLDLSCNQFSGNIPVQISNLTNLEKLYLSGNQLSGEIPVSLTNLHFLSVFNVAHNDLQGQIPTGGQFDTFTASSFEGNPKLCGSVVQRSCLPQNARTAGGHSSRKKLIIGFVIAACFGTVSFISVLIVWILSKRRISPGGDSDEIESETIFASSDGGLHLEVDKEASLVVLFPNKTNEIKDLTIVEILKATEYFSHENIIGCGGFGLVYKATLPDGTTLAIKKLSGDMGLMEREFKAEVETLSTAQHENLVALQGYCVHEGFRLLIYSYMENGSLDYWLHEKDDGPSQIDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYQTHVTTELVGTLGYIPPEYGQAWVATMRGDVYSFGVVMLELLTGRRPVDVSKPKMSGELVAWVQQMRSEGKQDQVFDPLLRGKGFEEGMLQVLDVACMCVNLNPLKRPTIREVVEWLKNVGSSN. 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05657 1110 Gene3D Ribonuclease Inhibitor 222 299 IPR032675 -
Seca2g05657 1110 ProSitePatterns Protein kinases ATP-binding region signature. 838 861 IPR017441 GO:0005524
Seca2g05657 1110 SUPERFAMILY L domain-like 258 717 - -
Seca2g05657 1110 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 471 1104 - -
Seca2g05657 1110 FunFam Tyrosine-sulfated glycopeptide receptor 1 395 733 - -
Seca2g05657 1110 Gene3D Ribonuclease Inhibitor 394 736 IPR032675 -
Seca2g05657 1110 SMART serkin_6 832 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05657 1110 ProSiteProfiles Leucine-rich repeat profile. 527 550 IPR001611 GO:0005515
Seca2g05657 1110 Pfam Leucine Rich Repeat 660 682 IPR001611 GO:0005515
Seca2g05657 1110 ProSiteProfiles Leucine-rich repeat profile. 660 683 IPR001611 GO:0005515
Seca2g05657 1110 ProSiteProfiles Protein kinase domain profile. 832 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05657 1110 SUPERFAMILY Protein kinase-like (PK-like) 816 1103 IPR011009 -
Seca2g05657 1110 Gene3D Phosphorylase Kinase; domain 1 797 907 - -
Seca2g05657 1110 Pfam Leucine rich repeat N-terminal domain 73 104 IPR013210 -
Seca2g05657 1110 SMART LRR_sd22_2 163 178 - -
Seca2g05657 1110 SMART LRR_sd22_2 525 540 - -
Seca2g05657 1110 SMART LRR_sd22_2 138 157 - -
Seca2g05657 1110 SMART LRR_sd22_2 658 684 - -
Seca2g05657 1110 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 295 390 - -
Seca2g05657 1110 PRINTS Leucine-rich repeat signature 166 179 - -
Seca2g05657 1110 PRINTS Leucine-rich repeat signature 525 538 - -
Seca2g05657 1110 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Seca2g05657 1110 Pfam Leucine rich repeat 375 435 IPR001611 GO:0005515
Seca2g05657 1110 Pfam Protein kinase domain 833 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05657 1110 SUPERFAMILY L domain-like 90 342 - -
Seca2g05657 1110 Gene3D Ribonuclease Inhibitor 70 221 IPR032675 -
Seca2g05657 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Seca2g05657 1110 FunFam Leucine-rich repeat receptor-like protein kinase 908 1110 - -
Seca2g05657 1110 FunFam Leucine-rich repeat receptor-like kinase 75 194 - -
Seca2g05657 1110 Gene3D Ribonuclease Inhibitor 300 393 IPR032675 -
Seca2g05657 1110 SMART LRR_typ_2 525 549 IPR003591 -
Seca2g05657 1110 SMART LRR_typ_2 138 162 IPR003591 -
Seca2g05657 1110 SMART LRR_typ_2 658 682 IPR003591 -
Seca2g05657 1110 SMART LRR_typ_2 163 187 IPR003591 -
Seca2g05657 1110 SMART LRR_typ_2 349 373 IPR003591 -
Seca2g05657 1110 SMART LRR_typ_2 398 422 IPR003591 -
Seca2g05657 1110 SMART LRR_typ_2 446 468 IPR003591 -
Seca2g05657 1110 FunFam Leucine-rich repeat receptor protein kinase MSP1 800 907 - -
Seca2g05657 1110 Gene3D Transferase(Phosphotransferase) domain 1 908 1110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05657 Seca-Chr2 142789041 142792373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05657 44 766 Miscellaneous Gene Families AT1G17240 50.889 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca2g05657 Pkinase 7.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05657 - - gmx:100782574 1734.54