Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05650 ATGGGGGAAGCAGTGCCTGTGGGATATAGATTTCATCCCACTGATGAAGAGCTTGTGGGTCACTACCTCAAATATAAACTTCTGGGCGATGATTCCAGGGTGTGCAATACCATTGCTGAGGTTGATGTTTGCAAAATTGAGCCTTGGGACTTACCAGCATTTTCCAAGGTAAAATCAGATGACCCTGAATGGTTTTTCTTCAGTCCTCGCGATTTGAAGTACACAAACAGTAGCAGGTCTAACAGGACAACCAAAGCTGGCTACTGGAAGGCCACTGGTAAAGACCGTAACATCAAGACACGTGGCACCAACAATGTCATTGGCACCAAGAAGACTCTGGTTTTCTACAGGGGCCGTGTTCCTCATGGTGTCAAGACCAATTGGGTTATTCACGAATATCATGCAATTACATTTCCTGTTGATAAGAGAACTTTTGTCTTGTGTCGCTTGATGGACAAAGCTGAGAAAAAAACAGAAGGCAGAACTGATGGATTGATAAATGAAGGGGAGCCTATTGCTGCTGATCATGAAAACCCAGCAATAGCTGATACAATTCCAGATGTATATACACTGCCAGAAATGACTCTGGAATCAATCTTTCCAACACGACCTCAGGCAGACGAATATGACTTCCCCTCACTACAGTACTCTCCAATTTTCACTGATCAGGAACTATTCCAGGATTCCACATTTACCAACATCTGTTTTGGGAATGAAAACAACATTACACAGATTCCATTTGATACAACTGAAGACGAAGACAATGTTGACTTATTCTTGAATGCAATTTTACTTGATGAGGATGTTGTCAATACTGAAGAAAGAAGGGATGCTTTTGTAAATGATTCAACTTTCTCACAGTCATTAACTCAGGTGTATTATGAAAGCAGTGAAACAGACGTTGAACTAGCCTCTGCACATTGTGGCAATATTTTCAGCACTACACCTGCATGTAAACATGCCGTTTCAAGCAGATTCCAGGTTATGAGAATGGTTGATACACCACAAGATGCTGTTTATGCTGGCCCGCTTTCTTTGTCTTCTAAAATTGAAGTAAAGCAAGAGAAAAAGGAAAGTATCTTTGGTGATAATTTCAGCGGAATGGACATTTCTGGTGACTCAGCGGCAAATAAACCTTTGTGTATGTCTGTTATAGAGAATATTAGCTCTCCTTCACCTCCAACAACAAGCTTTTCTTCATCTTCAAGAAGAAGCAAAACTAAATATCATCCAAGATCAGACAACTCTGTGGCACGCAGAACTGCTCCAAAATCTCAAACACAGAGAAAGGTTTCAAGCAAAGCAACATCCCAAAATGAGGTGAGATACCAGAAATAA 1338 0.4096 MGEAVPVGYRFHPTDEELVGHYLKYKLLGDDSRVCNTIAEVDVCKIEPWDLPAFSKVKSDDPEWFFFSPRDLKYTNSSRSNRTTKAGYWKATGKDRNIKTRGTNNVIGTKKTLVFYRGRVPHGVKTNWVIHEYHAITFPVDKRTFVLCRLMDKAEKKTEGRTDGLINEGEPIAADHENPAIADTIPDVYTLPEMTLESIFPTRPQADEYDFPSLQYSPIFTDQELFQDSTFTNICFGNENNITQIPFDTTEDEDNVDLFLNAILLDEDVVNTEERRDAFVNDSTFSQSLTQVYYESSETDVELASAHCGNIFSTTPACKHAVSSRFQVMRMVDTPQDAVYAGPLSLSSKIEVKQEKKESIFGDNFSGMDISGDSAANKPLCMSVIENISSPSPPTTSFSSSSRRSKTKYHPRSDNSVARRTAPKSQTQRKVSSKATSQNEVRYQK. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05650 445 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Seca2g05650 445 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 300 - -
Seca2g05650 445 MobiDBLite consensus disorder prediction 386 445 - -
Seca2g05650 445 ProSiteProfiles NAC domain profile. 5 153 IPR003441 GO:0003677|GO:0006355
Seca2g05650 445 MobiDBLite consensus disorder prediction 418 445 - -
Seca2g05650 445 MobiDBLite consensus disorder prediction 386 404 - -
Seca2g05650 445 SUPERFAMILY NAC domain 4 151 IPR036093 GO:0003677|GO:0006355
Seca2g05650 445 Pfam No apical meristem (NAM) protein 6 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05650 Seca-Chr2 142728604 142734520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05650 3 160 NAC Transcription Factor Family AT4G35580 57.055 6.81e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g05650 NAM 6.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05650 - - pcin:129287580 402.134