Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05649 ATGAAACTGGCCTGGCCTGGGTTGGAAGAAATTTTGTGCTGTTGTAAAGAAGCTTCCTGTGAGAGGTTATTATTAGCAGAATTCAAGGTAGGTGTCCGTCCTAATTGGATGGAGTTGACGCAACAAGTGAAAGGGTATTCTGATAGCAGGGAAGAAGAGGAGGAAGAGGAAGCAGTTGCAGCAGCAGCAGAGAATATCACAATCACAGGCGAAGAAAGCAGCAGCAGTAGGTTACACCATGAAGATGGAGGTTCCAATTTCATGAATCTGCAGAGAAAGCAGTTAGAGTTGATGGAGTTGTCACTGGGGAGTAGGAGTAGCACTAGCAACAACCAGAAGGAGAAGGAGGAGGAGGAAGGCAATAATTTTCAAGAATTAGGATCAGCTGGATCTTCAAATTCAAACAGAAAGGAGGGTGCAGCAGTGGAGAAAGAACACATGTTTGACAAAGTGGTGACACCGAGTGACGTAGGGAAGCTGAACAGACTGGTGATACCAAAGCAGTATGCTGAGAAGTATTTCCCCCTTGACTCTTCATCCAACGAGAAAGGTCTTCTTCTCAATTTTGAGGACCGAAATGGGAAGCTGTGGCGGTTCAGGTATTCCTATTGGAACAGCAGTCAGAGCTATGTGATGACCAAAGGTTGGAGCCGTTTTGTGAAGGAGAAGAAGCTGGATGCTGGGGACATCGTTTCCTTTCAAAGGGGTCTTGGAGAATTGTATAGACATAGGTTGTATATAGATTGGAGGAGAAGGCCTAATAATGTCCCTGATCCTTCAACCTCTCTCATTAGTACTCCTTTCTTTCTTCCCAATCACTACCCTCTCAGATGGGGTGCTGCTGCTGCCAGATTTTACTCTCTCCCTTCCCCACCACCACCTCCTCCTCCAACCTCTATTATGCCTCCCTACCATCATCACCATTTTAGTAATAATAATAATAATAATATCTATACTGCTTTTCACCAACAGCAGTACAGTAGTAGTGGTGGTGAGCACCTCAATTTGGGATCTGCTGGCTCACTCTATTATCTGAGGCCACCTCCACCATCAATGTCAATGCCTATGCCTGATCATCAACAACAAGACAGAGGGAACATTGTCCCCATGATCATTGATTCTGTACCAGTTTCTCATCATCACCATCACCACCATGCTGCTACTACTGGAAAAAGGCTGAGGCTATTTGGAGTGAACATGGAATGTGCTTCTTCACAGTCAGGAGAAGAAGAAGGAGAATCCAAAATATGTTTGTCCTCCTCGGCTTCAGCAGAAAATGTGGCAATGGCTAATCCACCAAGGTTTGGGGATCAGAAAGAAAGAGGGGTGTTTGATTTGGATCCTTCTTTGCAATACCGGCAGTGA 1365 0.452 MKLAWPGLEEILCCCKEASCERLLLAEFKVGVRPNWMELTQQVKGYSDSREEEEEEEAVAAAAENITITGEESSSSRLHHEDGGSNFMNLQRKQLELMELSLGSRSSTSNNQKEKEEEEGNNFQELGSAGSSNSNRKEGAAVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPNNVPDPSTSLISTPFFLPNHYPLRWGAAAARFYSLPSPPPPPPPTSIMPPYHHHHFSNNNNNNIYTAFHQQQYSSSGGEHLNLGSAGSLYYLRPPPPSMSMPMPDHQQQDRGNIVPMIIDSVPVSHHHHHHHAATTGKRLRLFGVNMECASSQSGEEEGESKICLSSSASAENVAMANPPRFGDQKERGVFDLDPSLQYRQ. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05649 454 CDD B3_DNA 146 235 IPR003340 GO:0003677
Seca2g05649 454 FunFam B3 domain-containing protein 141 262 - -
Seca2g05649 454 Pfam B3 DNA binding domain 148 252 IPR003340 GO:0003677
Seca2g05649 454 SMART B3_2 148 253 IPR003340 GO:0003677
Seca2g05649 454 SUPERFAMILY DNA-binding pseudobarrel domain 145 236 IPR015300 -
Seca2g05649 454 MobiDBLite consensus disorder prediction 428 454 - -
Seca2g05649 454 Gene3D - 141 258 IPR015300 -
Seca2g05649 454 ProSiteProfiles B3 DNA-binding domain profile. 148 253 IPR003340 GO:0003677
Seca2g05649 454 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 47 411 IPR044800 GO:0003700
Seca2g05649 454 MobiDBLite consensus disorder prediction 103 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05649 Seca-Chr2 142711563 142713753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05649 98 411 B3 DNA Binding Superfamily AT1G01030 45.646 1.19e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g05649 B3 2.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05649 K09287 - gmx:100778733 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05649 2 142711563 142713753 Seca2g05649 2 142711563 142713753 ECH