Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05647 ATGTTTTGCTTGGGGATTGAACCCCTCATTCAGCAATTTTCTACTCTTTTAGTATATGTGATATTTTTCATTGTTTTCTTTTTCAAGTCAACGTTGCTCATGCTTATGGTGTATTCAGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATCCGTAATCTCGAAAGTAAGCTAGATTCAGTAGTTTGTACCATTAAAGATCGCAAAGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCGGCCAGTTTATGTTATCTACACGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAGTCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTAGGACAATGGTGTGCATATAAGGTTGCACAGTCTTTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTCTCTCTTCTGAAATGTCAGCTGTCAGAGGGTGCAGTTTCTGACAAAAATGGGGGAGTTAATGACTCAGAGTATGGTGCAGCTCACAGTGGGTCTGAACATGAAGAGATCGAAGAAGGAGAGCTTCCTGACAGTCATGTTGTCTCTGGCGGGGAGCATGTGGATGTCATAATAGGAGCTGCTGTAGCTGATGGCAAGGTGACCCCCAAGGTGCAAGCACTAATCAAAATACTTCTCAAGTATCAGCACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTGGTTCTACCTAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCTAAGTTTCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGTCAATGCAATGTTGTTATTCGCTTTGACCTTGCGAAGACCGTTCTTGCATACATTCAGTCTAGGGGCCGTGCTAGAAAACCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAACGCCAGGAACAGTGAGGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCGACCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTCGTGAGCTTAAATTCTGCTGTAGGTCTTATACACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAAGCATGAAAAACCTGGAGGTCCCACTGAATATTCTTGCAAGCTTCAACTACCGTGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATGCGCCTGGCACAACAGGCATGGCATCATTTAGGATGA 1608 0.4322 MFCLGIEPLIQQFSTLLVYVIFFIVFFFKSTLLMLMVYSGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNGGVNDSEYGAAHSGSEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAWHHLG. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05647 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 403 IPR027417 -
Seca2g05647 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 436 IPR001650 -
Seca2g05647 535 Gene3D Dicer dimerisation domain 459 531 IPR038248 -
Seca2g05647 535 FunFam Endoribonuclease dicer-like 1 263 425 - -
Seca2g05647 535 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 464 535 IPR005034 GO:0016891
Seca2g05647 535 Pfam Helicase conserved C-terminal domain 272 389 IPR001650 -
Seca2g05647 535 Gene3D - 262 428 IPR027417 -
Seca2g05647 535 FunFam Endoribonuclease dicer-like 1 459 532 - -
Seca2g05647 535 SMART helicmild6 305 391 IPR001650 -
Seca2g05647 535 Pfam Dicer dimerisation domain 464 530 - -
Seca2g05647 535 MobiDBLite consensus disorder prediction 230 245 - -
Seca2g05647 535 CDD SF2_C_dicer 269 399 - -
Seca2g05647 535 PANTHER DICER-RELATED 36 530 - -
Seca2g05647 535 MobiDBLite consensus disorder prediction 219 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05647 Seca-Chr2 142659612 142664088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05647 288 431 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 4.15e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05647 K11592 - gmx:100811631 920.613