Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05643 ATGGACGCATACTCCTCTGGAGAAGAAGTGGTTGTTAAGACAAGAAAACCATATACAATCACAAAACAAAGAGAACGATGGACAGAAGAAGAACATAATAGATTTCTGGAAGCCCTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCATGCACAAAAATTCTTTTCAAAGTTGGAGAAAGAGGCCCTTATAAAGGGTGTTCCAGTAGGACAGGCTCTTGACATAGACATCCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCCCGTAAGACCAATGCTGGTGCCCCAACATTACATAGTGGATCAAAGTATGGAAAGCCGCTCATTTCAGTTGCATCTTCACATGGTAAACAAGCACTGGACTTCGAGAAAGAACCACTTCCAGAGAAGCATAATGTTGACGAAAGGTCAACAACTGTAAAAGAAAATAAGGATGAAAATTGCTCTAAAGCATTTACAATCCTCCTGGAGGCACCCTGTTCATCTGTGTCTTCAGCAAACAAGAATTCAATATCAATGAGTGTGCCGCAGAGAAATTCATGCGCCTTAAGGGAGTTTATACCTTCAGTGAAAGAGGTAATAACTCAAGATGAAACAAATGAATCTTTTGTCACTACTGAGATTGAAAATCAGAAGTTGGAGAAAGATAATGGCAAACACACACAAAAGACTAATGGCACTTGTAAAGTCTCTAAGTTGGAGAATTCTGATTTTCCCAAATTGGTTCAAACTGAGAAAACAGATGGTCTTACTTGTGCATTAACAATAGATGAGATGCAAGGCAATCAGAATTACCCAAGACATATCACTGTGCATGTTGTTGATGGGAACCTTGGAACCAGTACACAAAATCCATCCCAAGATATGATGATTCGAGACTCCATATTTAAGCCAATAGGAGGGGTTAATGGGCAACCTAATCCTTTCACCAATTCAACTGTATCAAACACAAGTGAAAGTCAAAATAACACAGCACGATCCTCTATTCATCAATCATTTCCTCCTTGTCCTCCCTTCACACAGCATACTCAGGATGATTACCAATCATTTCTTCACATGTCCTCCACATTTTCAAGTCTTATTGTCTCTACCTTGCTGCAAAATCCTGCAGCCCATGCTGCAGCAAGTTTTGCTGCAACATTTTGGCCCTATGCAAATGCAGAAACTTCAGCAGATTCTCCTGCGTGCTCTCAAGGAGGTTTTCCATCTAGGCAAATTGGTTCACCTCCAAGTGTTGCAGCTATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCAGCCCATGGACTGCTTCCTTTGTGTGCTCCACTCCATACTGCTTTTGCCTGTCCTCCTGCATCAGCTACTGCAGTTCCATCAATGAATATTGATGAAGCACCACCAAAGACAGAGCAAGGAGAGATTACACTACAAAATCCTCCTCCGCAAGATCAGATGCTAGATCTAGAATACTCGGAAGCTCTGCAAGCTCAACATTCAGCTTCTAAGTCACCAGCTGCTTCTTCATCCGAAACTGAGGAGAGTGGAGATGCCAAATTAAATACATCAAAGGCTACTAGTAATCATGAGATGAACCAAGCAATTTCTGAGAACCTTGATTCCAACAAAATGAAGGGCAGAAAACTGGTTGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGTGAAGAGACTGATGTGCTAGAGAAGGAGGAGAAAGAAAAGGAAGATTCCACAACACCCGATGCGAACCATTTAGCTACTGAGCCCAGTAATCGTCGCGGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGACGAATCGCCTTTCAGGCTCTATTCTCCAGGGAGGTGTTGCCCCAAAGCTTTTCACCTCCTCATGACTTGACAAAAAAGGATCATCAGATGGACAACGTCAAGGATAACAAGCACTACACAGACTGCAAAGATTACCTTGATAGCAAGAAATGCAGTTCTAACTGTGATGGGATGCTGAAAAACCTGCCATTTGTAGAAAATAACAATGAGGAGGAGGGACTGCTAACCATAGGTCTTGGACAAGGAAAGCTTAAGACTCATCGAACAGGGTTTAAACCTTACAAAAGATGTTTAGTAGAGGCCAAGGAAAACAGCATGGGAACGGTCTGCAACCAAGTTGAAGAGAAAGGTCCTAAGAGAATACGCATTGAGGGGGAGACTTCAACTTGA 2265 0.4318 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALIKGVPVGQALDIDIPPPRPKRKPSNPYPRKTNAGAPTLHSGSKYGKPLISVASSHGKQALDFEKEPLPEKHNVDERSTTVKENKDENCSKAFTILLEAPCSSVSSANKNSISMSVPQRNSCALREFIPSVKEVITQDETNESFVTTEIENQKLEKDNGKHTQKTNGTCKVSKLENSDFPKLVQTEKTDGLTCALTIDEMQGNQNYPRHITVHVVDGNLGTSTQNPSQDMMIRDSIFKPIGGVNGQPNPFTNSTVSNTSESQNNTARSSIHQSFPPCPPFTQHTQDDYQSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANAETSADSPACSQGGFPSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASATAVPSMNIDEAPPKTEQGEITLQNPPPQDQMLDLEYSEALQAQHSASKSPAASSSETEESGDAKLNTSKATSNHEMNQAISENLDSNKMKGRKLVDRSSCGSNTTSSSEETDVLEKEEKEKEDSTTPDANHLATEPSNRRGRSISNLTDSWKEVSEEGRIAFQALFSREVLPQSFSPPHDLTKKDHQMDNVKDNKHYTDCKDYLDSKKCSSNCDGMLKNLPFVENNNEEEGLLTIGLGQGKLKTHRTGFKPYKRCLVEAKENSMGTVCNQVEEKGPKRIRIEGETST. 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05643 754 MobiDBLite consensus disorder prediction 86 125 - -
Seca2g05643 754 SMART sant 23 71 IPR001005 -
Seca2g05643 754 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Seca2g05643 754 MobiDBLite consensus disorder prediction 507 552 - -
Seca2g05643 754 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Seca2g05643 754 MobiDBLite consensus disorder prediction 321 355 - -
Seca2g05643 754 MobiDBLite consensus disorder prediction 318 355 - -
Seca2g05643 754 Gene3D - 26 74 - -
Seca2g05643 754 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Seca2g05643 754 MobiDBLite consensus disorder prediction 577 595 - -
Seca2g05643 754 MobiDBLite consensus disorder prediction 596 611 - -
Seca2g05643 754 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Seca2g05643 754 PANTHER SWI/SNF COMPLEX-RELATED 7 637 - -
Seca2g05643 754 CDD SANT 26 69 IPR001005 -
Seca2g05643 754 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Seca2g05643 754 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Seca2g05643 754 MobiDBLite consensus disorder prediction 471 611 - -
Seca2g05643 754 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Seca2g05643 754 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05643 Seca-Chr2 142639560 142648584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca2g05643 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05643 K12133 - gmx:778086 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05643 2 142639560 142648584 Seca2g05643 2 142639560 142648584 ECH