LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05639	ATGGCCAACCTTTCTAATTCGAAGATTGTTGAATGTGACGGTGAAGACCACAAGAAATTAGAAGATGAAGAATGCTTCACATATGCTATGCAGCTTTGCAACTCTGTTGTTCTTCCCATGGCACTGAAATCCGCAACTGAGCTGGGCGTATTTGACGTCTTGCAAAAAGCGGGTACAGATGCTAAGCTCTCTGCAAAGGAGATTGCATCCCAGCTTTCCTGCAGCAACCCAGAAGCAGCCGCAATGTTAGATCGCATCCTCGCCCTTCTTGCCTCCCACTCTGTGCTTCACTGCTCTGTTCTTCCCGATGAACAAAACCTTGGAATTGGATCCTTTCACAGACTCTACAGCATCACCCCTGTCGCCAGATTCTTCGCTCGCAATTCGGATGGTGTTTCATTAGGACCCTTGTTGGCCTTGCTTCATGATAACATCTTCCTAGCTAGCTGGTCCCAGCTGAAGGATGCGATTCGGGAAGGGGGTATTCCATTCAACAGAGTTCATGGAACACATGCCTTTGAGTATCCGAGCTTGGACTCGAGGTTCAATCAACTCTTTAATACAGCAATGATCAATCACACCACTTTAATCATGAAGAAGGTTCTTGAATGCTACAGTGGTTTGAAGGGCATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAACATTAACATGATCACTTCCAAATATCCTCATATCCAGGGTATCAATTTCGACTTGCCTCATGTCATTCAACATGCCCCTTCCTATCCTGGAGTGGAACACGTTGGCGGGGATATGTTTGAAAATGTGCCTAAAGGAGATGCTATCTTCATGAAGTGGATACTTCACGATTGGAGTGATGAGCATTGCTTGAAGCTTTTGAAGAATTGCTATGATGCTATTCCTGATGATGGGAAAGTGATTGTGGTGGAGGCAGTTCTTCCTATTATTCCTGAGAATAATGCTGCTTGGAAATGTGTCTCCCAATCCGATGTTGTGATGATGACTCAAAACCCAGGAGGGAAAGAGCGATCTGAGCAACAATTCATGGAACTGACAACTGCAGCTGGATTTAGTGGCATTAGATATGAATGTCGTGTCCGTACCTTCTGGGTTATGGAGTTCTTCAACAGAGAAGTGTGTTTGGATTTCAATCCCTCCCTGATGGCAAGCCTTCCTGATTCCGATTCGAAGAAAAAGGTGGTCGTGGAGTGTGAGTATGACCACGAGAAACCAGAATCCGAATTGGAAGATGAAGAAAGCTTCTCGTATGCTGTGCAACTTGGCAATTCTATTGTGCTTCCCATGGCACTCCAATCCGCAACGGAGTTGGGTGTATTTGACGTCTTGCAGAAAGCAGGTAGAAGTGCTAAACTCTCTTCCAAGGATATTGCATCTAAGCTTTCCTGCAACAATCCAGAAGCAGCCGCAATGTTAGATCGCATCCTCGCCCTTCTTGCCTCCCACTCTGTGCTTAACTGCTCTGTCCTTCCTGATGAACAAAACCTTGGATCCTTTCACAGACTCTACAGCATCACCCCTGTCGCCAGATTCTTCGCTCGCGATTCCGATGGTGTTTCATTAGGGCCTTTGATGGCCTTGCATCAAGATAAAATCTTCCTAGCTAGCTGGTCCCAGCTGAAAGACGCAATACGGGAAGGGGGTATTCCATTCAACAGGGTTCATGGAACACATGCCTTTGAGTATCCAAGCTTGGACTCGAGGTTCAATCAAGTTTTCAATTCAGCAATGATCAATCACACTACTTTAGTTATGAAGAAGGTTCTTGAATGCTACAAAGGTTTTGAGGACATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCACCATTAGCATGATCACTTCCAAATACCCTCATATCCAGGGTATCAATTTTGACTTGCCTCATGTTATACAACATGCCCCTTCCTATCCTGGAGTGGAACACGTTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGCAGATGCCATCTTTATGAAGTGGATACTTCATGATTGGAGTGATGAGCACTGCTTGAAACTTTTGAAGAATTGCTATAATGCTATTCCAGAGGATGGAAAGGTGATTGTTTTGGAGGCAGTGCTTGCTATTATACCTGAGAATAATGCTACTTGGAAGTTTGTGTCCCAATCGGATGTGCTGATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACTGAGCAAGAATTCATGGAATTGGCAACTGCAGCTGGATTTAGTGGCATTAGATATGAATGCTATGTCCGTACCTTTTGGATTATGGAATTCTTCAAGTAG	2292	0.4481	MANLSNSKIVECDGEDHKKLEDEECFTYAMQLCNSVVLPMALKSATELGVFDVLQKAGTDAKLSAKEIASQLSCSNPEAAAMLDRILALLASHSVLHCSVLPDEQNLGIGSFHRLYSITPVARFFARNSDGVSLGPLLALLHDNIFLASWSQLKDAIREGGIPFNRVHGTHAFEYPSLDSRFNQLFNTAMINHTTLIMKKVLECYSGLKGIKRLVDVGGGLGININMITSKYPHIQGINFDLPHVIQHAPSYPGVEHVGGDMFENVPKGDAIFMKWILHDWSDEHCLKLLKNCYDAIPDDGKVIVVEAVLPIIPENNAAWKCVSQSDVVMMTQNPGGKERSEQQFMELTTAAGFSGIRYECRVRTFWVMEFFNREVCLDFNPSLMASLPDSDSKKKVVVECEYDHEKPESELEDEESFSYAVQLGNSIVLPMALQSATELGVFDVLQKAGRSAKLSSKDIASKLSCNNPEAAAMLDRILALLASHSVLNCSVLPDEQNLGSFHRLYSITPVARFFARDSDGVSLGPLMALHQDKIFLASWSQLKDAIREGGIPFNRVHGTHAFEYPSLDSRFNQVFNSAMINHTTLVMKKVLECYKGFEDIKRLVDVGGGLGITISMITSKYPHIQGINFDLPHVIQHAPSYPGVEHVGGDMFESVPKADAIFMKWILHDWSDEHCLKLLKNCYNAIPEDGKVIVLEAVLAIIPENNATWKFVSQSDVLMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRTFWIMEFFK.	764

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05639	763	Gene3D	-	10	125	IPR036388	-
	Seca2g05639	763	FunFam	Caffeic acid O-methyltransferase	516	763	-	-
	Seca2g05639	763	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	30	373	IPR016461	GO:0008168
	Seca2g05639	763	Pfam	O-methyltransferase domain	150	355	IPR001077	GO:0008171
	Seca2g05639	763	Pfam	O-methyltransferase domain	540	745	IPR001077	GO:0008171
	Seca2g05639	763	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	130	370	IPR029063	-
	Seca2g05639	763	FunFam	Caffeic acid 3-O-methyltransferase	9	125	-	-
	Seca2g05639	763	Gene3D	Vaccinia Virus protein VP39	516	763	IPR029063	-
	Seca2g05639	763	Gene3D	Vaccinia Virus protein VP39	126	373	IPR029063	-
	Seca2g05639	763	Pfam	Dimerisation domain	40	91	IPR012967	GO:0046983
	Seca2g05639	763	Pfam	Dimerisation domain	432	483	IPR012967	GO:0046983
	Seca2g05639	763	FunFam	Caffeic acid 3-O-methyltransferase	401	515	-	-
	Seca2g05639	763	SUPERFAMILY	"Winged helix" DNA-binding domain	413	518	IPR036390	-
	Seca2g05639	763	Gene3D	-	399	515	IPR036388	-
	Seca2g05639	763	FunFam	Caffeic acid O-methyltransferase	126	373	-	-
	Seca2g05639	763	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	520	761	IPR029063	-
	Seca2g05639	763	PANTHER	O-METHYLTRANSFERASE	424	748	IPR016461	GO:0008168
	Seca2g05639	763	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	422	763	IPR016461	GO:0008168
	Seca2g05639	763	SUPERFAMILY	"Winged helix" DNA-binding domain	21	128	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05639	Seca-Chr2	142604253	142617317	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05639	411	763	Monolignol Biosynthesis Gene Families	AT5G54160	54.108	4.03e-136	405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05639	K13066		-	atri:130825453	723.005