Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05638 ATGGCACCCCCTTCATTAGAATCCAACACAAAACTTGCCAACGGGGAATATGCAGGAAAAGGAATAGAAGAAAAAGAAGATGATGGCCTCATGTTTGGCATGCAAATGATGGGTTCTTTTGTGATTCCAATGGCTCTGCGGTCTGCCATTGAGCTGGGTGTCTTTGACATCTTAGCCAAAGCCGGTGAAGGTGCCAAGCTCTCTGCAAAGGATATTGCAGTTCGGATTGGCACCAAAAACCCCGAAGCTCCCATAATGTTGGATCGTCTTCTTAGGATGTTGGCCAGTCACTCTCTGTTACATTGCTCTGTTCCTCAAGATCCACAAAGCCTTGCTACTTTGCCTCAGAGGTTCTACAGCCTCTCCCATGGGTCCAAATATTTTGTCACTGATGCTGATGGTGTCTCTTTAGGACCCACCATGGCGTTGGTTGTGGACAAAGTCTTCTACCAAAGCTGGAGTGAATTGAAAGGGGCGATCGTGGAAGGAGGCGTACCATTCAACAGGGTTTATGGTATGCATGCCTTTGAGTACCCGAGTGTGGATCCCAAGTTCAATGACCTTTTTAACAAAGCTATGGTCAACATCACCACTATAATGATGAAGAGGATTCTTGAATTATACCAAGGTTTTGAGGATGTCACTAAGCTAGTCGATGTTGGTGGAGGACTTGGGATCAATCTCAAATTGATCACATCCAAATACCCTCATCTCAAGGCTATTAATTTTGACTTGCCTCATGTTGTACAACACGCCCCCGTCTATGAAGGTGTGGAGCATGTGGGAGGAGATATGTTTGAAAGCGTTCCCACAGGAGATGCTGTTTTTATGAAGTGGATACTTCATGATTGGAGTGACGAGCACTGCTTGAAGCTTCTGAAGAATTGCTACAAGGCTGTTCCTGATGATGGGAAGGTTATTGTGGTGGACTCAATTCTGCCCATTGAGGCTGAGAAAACAGCTATTGCCAAGAATGCTTTCGTATCTGACCTCTTAATGATGACTCAGAATCCTGGAGGGAAAGAGCGGACCCAGCAAGAATTCATGGAATTAGCAAAGGGATCTGGATTTAGTGGAATCAGATTCGTGTGTTGTGTTTCTGGCCTCTGGGTCATGGAGTTCTTCAAGTAG 1131 0.4545 MAPPSLESNTKLANGEYAGKGIEEKEDDGLMFGMQMMGSFVIPMALRSAIELGVFDILAKAGEGAKLSAKDIAVRIGTKNPEAPIMLDRLLRMLASHSLLHCSVPQDPQSLATLPQRFYSLSHGSKYFVTDADGVSLGPTMALVVDKVFYQSWSELKGAIVEGGVPFNRVYGMHAFEYPSVDPKFNDLFNKAMVNITTIMMKRILELYQGFEDVTKLVDVGGGLGINLKLITSKYPHLKAINFDLPHVVQHAPVYEGVEHVGGDMFESVPTGDAVFMKWILHDWSDEHCLKLLKNCYKAVPDDGKVIVVDSILPIEAEKTAIAKNAFVSDLLMMTQNPGGKERTQQEFMELAKGSGFSGIRFVCCVSGLWVMEFFK. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05638 376 PIRSF O-mtase 14 376 IPR016461 GO:0008168
Seca2g05638 376 FunFam Caffeic acid 3-O-methyltransferase 14 128 - -
Seca2g05638 376 Pfam O-methyltransferase domain 153 358 IPR001077 GO:0008171
Seca2g05638 376 SUPERFAMILY "Winged helix" DNA-binding domain 24 131 IPR036390 -
Seca2g05638 376 Gene3D - 12 128 IPR036388 -
Seca2g05638 376 PANTHER O-METHYLTRANSFERASE 36 357 IPR016461 GO:0008168
Seca2g05638 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 376 IPR016461 GO:0008168
Seca2g05638 376 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Seca2g05638 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 374 IPR029063 -
Seca2g05638 376 Gene3D Vaccinia Virus protein VP39 129 376 IPR029063 -
Seca2g05638 376 FunFam Caffeic acid O-methyltransferase 129 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05638 Seca-Chr2 142583716 142585797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05638 22 376 Monolignol Biosynthesis Gene Families AT5G54160 52.113 6.98e-137 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05638 K13066 - gmx:100789402 532.332