Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05636 ATGCAAGCCGAAGAGCAAAGCAATCAGATGGAGACACAAAGCTCACAGCATGCACAAATTATTGAAATCAGTGGAGATATTCTTCCGGATGTAAGAAGGAACATTTGTGAGGAAGCACCATGTGGATTCTCGAATGCTGGATCCATCTCTAAGGATTCAGAAGAACGATCAACTTCAATGCGGAAGCTTTTGATGGCAGTAGTTCTGTGTGTTATTTTCATGAGCATTGAAGTAGTTGGTGGCATTAAAGCTAATAGCCTTGCAATTTTGACAGATGCAGCCCATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCTTTATTTTCATTATGGGCTGCAGGGTGGGAAGCCAATCCTCGCCAGTCATATGGATTTTTCAGAATAGAGATTCTAGGTGCTTTGGTTTCTATTCAGTTAATATGGTTGCTTGCTGGGATTCTGGTATATGAAGCCATTGGAAAAATTGTCTCTGGCACTCATCATGTGGATGGCTTTCTAATGTTTGTTGTTGCTACCTTTGGTCTAGTGATTAATATCATTATGGCTCTTTTATTGGGTCATGACCATGGACATGGACATGGACATGATGATCATGGCCACAACCATGGATTACAAGTGTCCACTCATCATCATCATCATCATCATGGTGTAAAACATCCAGAAGATCATACTCATGAAGATCACAAACACCATCTTGCTAAACCGCTTCTTGGTGATGGTGAATCAAATTCAAAAGAGAAGAAAAGGAGATGGAACATAAATGTACAAGGGGCTTATCTACATGTACTTGGGGACTCAATCCAGAGTGTTGGGGTAATGATTGGGGGAGCAATGATATGGTATAATCCTGAGTGGCAATTAGTTGATTTAATTTGCACTTTAATCTTTTCAGTAATTGTTTTAGGGACAACTATTAATATGCTGAGGAACATATTGGAAGTCCTTATGGAGAGCACACCAGGTGAGATAGATGCAGCTAAGCTTGAAAAGGGGTTGCTGGACATGGAAGAAGTGGTGGCTGTTCATGAGTTGCACATTTGGGCCATTACAGTTGGGAAAGTTTTATTGGCTTGTCATGTTAAAATCAGACCCCAAGTGGATGCAGAATTGGTGCTGGAAAAGGTTATAGACTATATCAGAACGGTTCATAACATCACTCATGTCACTATACAAATAGAGCGCTAG 1185 0.4059 MQAEEQSNQMETQSSQHAQIIEISGDILPDVRRNICEEAPCGFSNAGSISKDSEERSTSMRKLLMAVVLCVIFMSIEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEANPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIGKIVSGTHHVDGFLMFVVATFGLVINIIMALLLGHDHGHGHGHDDHGHNHGLQVSTHHHHHHHGVKHPEDHTHEDHKHHLAKPLLGDGESNSKEKKRRWNINVQGAYLHVLGDSIQSVGVMIGGAMIWYNPEWQLVDLICTLIFSVIVLGTTINMLRNILEVLMESTPGEIDAAKLEKGLLDMEEVVAVHELHIWAITVGKVLLACHVKIRPQVDAELVLEKVIDYIRTVHNITHVTIQIER. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05636 394 Gene3D Cation efflux protein transmembrane domain 59 315 IPR027469 -
Seca2g05636 394 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 321 393 IPR036837 -
Seca2g05636 394 MobiDBLite consensus disorder prediction 194 245 - -
Seca2g05636 394 NCBIfam cation diffusion facilitator family transporter 60 394 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca2g05636 394 Pfam Cation efflux family 63 316 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca2g05636 394 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 12 394 - -
Seca2g05636 394 MobiDBLite consensus disorder prediction 219 245 - -
Seca2g05636 394 SUPERFAMILY Cation efflux protein transmembrane domain-like 57 317 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05636 Seca-Chr2 142574635 142577385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05636 10 394 Inorganic Solute Cotransporters AT2G46800 71.178 3.83e-175 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05636 K14689 - gmx:100790458 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05636 2 142574635 142577385 Seca2g05636 2 142574635 142577385 ECH