Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05634 ATGGTAAATTTGGCCAAGCTTCTAAAGAGGCAGCAGATATATTGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAGCACAAGATTCCAATGAGCAACATAAATTATCTGAAGATACAAATACTTCTCATCAGTATGATTGCAAAAATCAAAATCAGGAGAATATTACCACTCTAGCTATTGGTCAGTCTGGTCAAGCTGAAGCAAAATTGCCAAACAGCCAGCTTGGATTCTTTCCTGGTATTGGGGTTACTTCTGATAATAAGTCTACGGGTAATCGACACGGTAATCTTTTCCCTTCTATGCTTTCCACACAATCAGGTAAGCATCCCATATGGACCCCAAAACCAGTGTGCCACAAAGAGAGTTCCCCATTTCCTACAAGTACTTCTTCCCAGTCCAATACTGAAAGTCACAACTCAGAACATCATCACTGGTCAGATGATGCCACCTACACTTCTGATCAACATGTAGATGATCAAAGAAATTTGGATTGCGGGATGCATGACTCTCCTGCTACTGGTCAAAATCCTGGTAGTAGTTTTTACCATGATGCAGCAAATCATAATAGCAGTGGTGTATATGGAAGCGTAGGCAGCGGAAGTGATGGAAATGCTCCTTCAGCTGTTGAAGCCCAGAACAACCTTGACAGTTTTATGGATAGTGGGCACCACACTTGTGATGGATTCAAAGGGACAGATTCTCATGGCACCAGCCAAAGACAAGCAGCTCTAACAAAGTTTCGACTTAAACGAAAAGACAGATGCTATGAGAAAAAGGTCCGATATGAAAGCCGAAAAAGACTGGCAGAGCAGCGCCCTCGGGTGAAAGGACAATTTGTTCGCCAAGTGCACAATGAACAAGCAGTAGCAGATGCCGGTGGTGGTTTCTGA 897 0.4314 MVNLAKLLKRQQIYWYSSSKLLQPLFPAQDSNEQHKLSEDTNTSHQYDCKNQNQENITTLAIGQSGQAEAKLPNSQLGFFPGIGVTSDNKSTGNRHGNLFPSMLSTQSGKHPIWTPKPVCHKESSPFPTSTSSQSNTESHNSEHHHWSDDATYTSDQHVDDQRNLDCGMHDSPATGQNPGSSFYHDAANHNSSGVYGSVGSGSDGNAPSAVEAQNNLDSFMDSGHHTCDGFKGTDSHGTSQRQAALTKFRLKRKDRCYEKKVRYESRKRLAEQRPRVKGQFVRQVHNEQAVADAGGGF. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05634 298 MobiDBLite consensus disorder prediction 124 138 - -
Seca2g05634 298 MobiDBLite consensus disorder prediction 88 112 - -
Seca2g05634 298 Pfam CCT motif 242 284 IPR010402 GO:0005515
Seca2g05634 298 MobiDBLite consensus disorder prediction 139 167 - -
Seca2g05634 298 MobiDBLite consensus disorder prediction 174 189 - -
Seca2g05634 298 MobiDBLite consensus disorder prediction 88 189 - -
Seca2g05634 298 ProSiteProfiles CCT domain profile. 242 284 IPR010402 GO:0005515
Seca2g05634 298 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 29 284 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05634 Seca-Chr2 142564748 142566608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05634 215 290 Response Regulator Gene Family AT5G24470 59.211 5.54e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g05634 CCT 1.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05634 K12130 - gmx:100779346 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05634 2 142564748 142566608 Seca2g05634 2 142564748 142566608 ECH