LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05633	ATGGGTGAAGTGGCGGCGGGGGTGATGCAGAGGCACGAGGAGGAACAGAGCAACCACAATAACCGCAATGCCTCGGAGGAGGAGGTGGTGGTTAGATGGGAGAGGTTTCTGCCTCGGATGGTTCTGAGAGTCTTGCTTGTCGAAGCTGATGATTCTACTCGCCAGATTATTGCTGCCCTTCTCCGTAAATGCAGTTACAGAGTTGCTGCAGTGCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAATATTCCTGTCATAATGATGTCTTCTCGTGATTCAGTTAGCATGGTGTTCAAATGCATGTCAAAAGGTGCAGCCGATTTTCTTATAAAACCTGTTCGGAGGAATGAGCTAAGGAATTTGTGGCAGCATGTATGGAGAAGACATGCTATCAGCAGGCCTCCTCAAGATTTAACATTTCCACAGAATAAACTTAATGTTGCTGCAGAAAACAATGCTACGAGTAATAATTCTACTCGTTCTGTGGCTTCCACGCAGAAAAATAATGAATACAACGAGAAAACTAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGACTGAGAGTGCATACATGGAAAATATGCAGGATACGTCCCAGCTGAAGTGTACTTCAAATTTGAGCAATATTGACATGGTAAAGCACGAAAAGTCTACCAAATTTGAAAGGGAATCAGCTGAGCATAACGATGAAGCGGAAGATAAATCAATTATATTTGTATCTGAAGCTGCAATGTACAACAAAACCTTAACAGGTTTAAGGCTAGGTCAAGGCTATGATTGTAGTAGAACAGAAAACCAAGATGAAGTTGTAAGAGCAGAGTTAAGCAAAGCCCATCATCATATTCATGGATGCAGTGATGAACCAGTGAAACCTTCTACTGGGGCTATTGATTTGATTGCTACATTTGAGAATCTTCCAAAGAGCGCTGAAGAAAATTGTAGTTTCAACATTGGTAATACAGCCAAGTTTGGTTTTGATACACAATTGGAACTCTCTTTAAAAAGAGATTCTCCTGGCAGCTCATGTAAACCTGCAACTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCTTTTTCTCGGTGA	1209	0.4136	MGEVAAGVMQRHEEEQSNHNNRNASEEEVVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYRVAAVRDGLKAWETLKNKASDIDLILTEVELPSISGFSLLTLIMEHDICKNIPVIMMSSRDSVSMVFKCMSKGAADFLIKPVRRNELRNLWQHVWRRHAISRPPQDLTFPQNKLNVAAENNATSNNSTRSVASTQKNNEYNEKTSEAQSTCTSPFLEAETESAYMENMQDTSQLKCTSNLSNIDMVKHEKSTKFERESAEHNDEAEDKSIIFVSEAAMYNKTLTGLRLGQGYDCSRTENQDEVVRAELSKAHHHIHGCSDEPVKPSTGAIDLIATFENLPKSAEENCSFNIGNTAKFGFDTQLELSLKRDSPGSSCKPATEERQILNHSNASAFSR.	403

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca2g05633	402	SUPERFAMILY	CheY-like	38	172	IPR011006	-
Seca2g05633	402	MobiDBLite	consensus disorder prediction	383	402	-	-
Seca2g05633	402	Coils	Coil	9	29	-	-
Seca2g05633	402	Gene3D	-	40	322	-	-
Seca2g05633	402	ProSiteProfiles	Response regulatory domain profile.	43	161	IPR001789	GO:0000160
Seca2g05633	402	SMART	REC_2	42	157	IPR001789	GO:0000160
Seca2g05633	402	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	42	281	IPR045279	GO:0009736
Seca2g05633	402	Pfam	Response regulator receiver domain	44	155	IPR001789	GO:0000160
Seca2g05633	402	MobiDBLite	consensus disorder prediction	1	24	-	-
Seca2g05633	402	CDD	psREC_PRR	44	147	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05633	Seca-Chr2	142561100	142564450	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05633	30	248	Response Regulator Gene Family	AT5G24470	60.090	4.20e-84	265

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Seca2g05633		Response_reg	1.8e-22	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05633	K12130		-	gmx:100779346	551.977

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