Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05633 ATGGGTGAAGTGGCGGCGGGGGTGATGCAGAGGCACGAGGAGGAACAGAGCAACCACAATAACCGCAATGCCTCGGAGGAGGAGGTGGTGGTTAGATGGGAGAGGTTTCTGCCTCGGATGGTTCTGAGAGTCTTGCTTGTCGAAGCTGATGATTCTACTCGCCAGATTATTGCTGCCCTTCTCCGTAAATGCAGTTACAGAGTTGCTGCAGTGCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAATATTCCTGTCATAATGATGTCTTCTCGTGATTCAGTTAGCATGGTGTTCAAATGCATGTCAAAAGGTGCAGCCGATTTTCTTATAAAACCTGTTCGGAGGAATGAGCTAAGGAATTTGTGGCAGCATGTATGGAGAAGACATGCTATCAGCAGGCCTCCTCAAGATTTAACATTTCCACAGAATAAACTTAATGTTGCTGCAGAAAACAATGCTACGAGTAATAATTCTACTCGTTCTGTGGCTTCCACGCAGAAAAATAATGAATACAACGAGAAAACTAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGACTGAGAGTGCATACATGGAAAATATGCAGGATACGTCCCAGCTGAAGTGTACTTCAAATTTGAGCAATATTGACATGGTAAAGCACGAAAAGTCTACCAAATTTGAAAGGGAATCAGCTGAGCATAACGATGAAGCGGAAGATAAATCAATTATATTTGTATCTGAAGCTGCAATGTACAACAAAACCTTAACAGGTTTAAGGCTAGGTCAAGGCTATGATTGTAGTAGAACAGAAAACCAAGATGAAGTTGTAAGAGCAGAGTTAAGCAAAGCCCATCATCATATTCATGGATGCAGTGATGAACCAGTGAAACCTTCTACTGGGGCTATTGATTTGATTGCTACATTTGAGAATCTTCCAAAGAGCGCTGAAGAAAATTGTAGTTTCAACATTGGTAATACAGCCAAGTTTGGTTTTGATACACAATTGGAACTCTCTTTAAAAAGAGATTCTCCTGGCAGCTCATGTAAACCTGCAACTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCTTTTTCTCGGTGA 1209 0.4136 MGEVAAGVMQRHEEEQSNHNNRNASEEEVVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYRVAAVRDGLKAWETLKNKASDIDLILTEVELPSISGFSLLTLIMEHDICKNIPVIMMSSRDSVSMVFKCMSKGAADFLIKPVRRNELRNLWQHVWRRHAISRPPQDLTFPQNKLNVAAENNATSNNSTRSVASTQKNNEYNEKTSEAQSTCTSPFLEAETESAYMENMQDTSQLKCTSNLSNIDMVKHEKSTKFERESAEHNDEAEDKSIIFVSEAAMYNKTLTGLRLGQGYDCSRTENQDEVVRAELSKAHHHIHGCSDEPVKPSTGAIDLIATFENLPKSAEENCSFNIGNTAKFGFDTQLELSLKRDSPGSSCKPATEERQILNHSNASAFSR. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05633 402 SUPERFAMILY CheY-like 38 172 IPR011006 -
Seca2g05633 402 MobiDBLite consensus disorder prediction 383 402 - -
Seca2g05633 402 Coils Coil 9 29 - -
Seca2g05633 402 Gene3D - 40 322 - -
Seca2g05633 402 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Seca2g05633 402 SMART REC_2 42 157 IPR001789 GO:0000160
Seca2g05633 402 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 281 IPR045279 GO:0009736
Seca2g05633 402 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
Seca2g05633 402 MobiDBLite consensus disorder prediction 1 24 - -
Seca2g05633 402 CDD psREC_PRR 44 147 - -
Seca2g05633 402 MobiDBLite consensus disorder prediction 375 402 - -
Seca2g05633 402 MobiDBLite consensus disorder prediction 8 24 - -
Seca2g05633 402 MobiDBLite consensus disorder prediction 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05633 Seca-Chr2 142561100 142564450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05633 30 248 Response Regulator Gene Family AT5G24470 60.090 4.20e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g05633 Response_reg 1.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05633 K12130 - gmx:100779346 551.977