Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05627 ATGGCAGCTAAGGCTACTCTGTCTCTTTCCTTCACGTCACCCTCTTCTTCCTTACTCAACCTCAACCTCAACCATAAGCCTCAATTTGGAGGTGCGGTGAAACACTTCCTTCTGTGTTCTGCGGGGCCTTTTCCTTCCTCATGTCTTGTTGCGGGACGCAGCTCCAAGGCTAGGGTTTTCACTGCCTTAGCGGCGGTGGTGGATGAAGAAACGGACGTGGAGCGAGAAAACGATGAAGAGGAAGAGCAGTTTAAGCAGAGAAGAGCTACTGAAGTGTATGTGTGCAACCTTCCAAGAAGCTGTGACACAGAACAGCTACTTCATATGTTCAAGCCTCACGGATCCATTCTATCTATAGAGGTTTGCCGGAATCCGGAGACTGGTGAAAGTAAAGGGAGTGCTTTTGTCACATTAGGATCTATTAACTCGGCAAAAAATGCAATTGTTGCATTGGATGGAATGGATGTTGGTGGGAGGGAAATGCGGGTTAGATTTTCAGTTCAGATGAATCCAAGTAGAAGGAATCTTGAGACAATGAACTCGTCACCCAAGAAAACTATATACTATGAAGGTCCTCATAAGGTCTATGTTGGGAATCTTGCTAAGTCTGCTAAACCTGAAGACGTGAGACAACTGTTCAGTAGATTTGGTAATGTGGCTAGTGTAAGGGTGTTGCAAGATTTGAAACAAGGGAAAAGCCGGGTCTATGCGTTTGTCTCTTATCTTTCTCAGAGAGAACGTGATGAAGCAGTGTCCCTCAATGGAACAGAATTTCATGGTCGTAAACTAGTTGTTAGAGAGGGTGTAGGGAAAGCTGAGACATAG 825 0.4533 MAAKATLSLSFTSPSSSLLNLNLNHKPQFGGAVKHFLLCSAGPFPSSCLVAGRSSKARVFTALAAVVDEETDVERENDEEEEQFKQRRATEVYVCNLPRSCDTEQLLHMFKPHGSILSIEVCRNPETGESKGSAFVTLGSINSAKNAIVALDGMDVGGREMRVRFSVQMNPSRRNLETMNSSPKKTIYYEGPHKVYVGNLAKSAKPEDVRQLFSRFGNVASVRVLQDLKQGKSRVYAFVSYLSQRERDEAVSLNGTEFHGRKLVVREGVGKAET. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05627 274 SMART rrm1_1 194 266 IPR000504 GO:0003723
Seca2g05627 274 SMART rrm1_1 91 164 IPR000504 GO:0003723
Seca2g05627 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Seca2g05627 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Seca2g05627 274 FunFam 30S ribosomal protein 2, chloroplastic 180 268 - -
Seca2g05627 274 SUPERFAMILY RNA-binding domain, RBD 86 177 IPR035979 GO:0003676
Seca2g05627 274 Coils Coil 63 83 - -
Seca2g05627 274 Gene3D - 174 274 IPR012677 -
Seca2g05627 274 PANTHER OS02G0815200 PROTEIN 35 266 - -
Seca2g05627 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Seca2g05627 274 Gene3D - 53 173 IPR012677 -
Seca2g05627 274 SUPERFAMILY RNA-binding domain, RBD 189 272 IPR035979 GO:0003676
Seca2g05627 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05627 Seca-Chr2 142537902 142542161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05627 89 273 Eukaryotic Initiation Factors Gene Family AT4G34110 31.720 3.19e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05627 - - gsj:114400287 306.219