Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca2g05617 | ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGATGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGATGGTGGTGAAGATGAAAATGTTGAAGGTAGTGTTGAAGAACACGAATACGAGGAGTCAGCAGCAGAGGCTGGTGGGAAAGACCAATTGCCTGAAGCAGAAAAAAGTGACATTGCTACTGAATTTGTGGAAGATGAGCAAAAAGCATCTCTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCTCCGCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGCATGTGAAGATGATTTAAGGGAATTGTGTGAACCAATGGGTGATATTCTCGAGGTACGGTTAATGAAAGATAGGGACACTGGAGAAAACAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAAGAGGTAGCACAAAGGGCCATTGAGGAGATACATAGCAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCATTGTCTGAAACCAAGCACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACGGAGGATGAGTTTAGAAATGTCATTGAGGGTGTTGGTCCTGGAGTTGAAAACATCGAGCTCATAAAGGACCCTCAAAATCCAAGCAAGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCGAGTTTTAAGCTAGATGGGAATACACCAACTGTCACATGGGCAGATCCAAAGAATTCACCTGACCATTCTGCTTCTTCGCAGGTTAAAGCTCTATATGTGAAGAACATACCTGAGAATATTACTACAGACCAGCTGAAGGAGCTTTTCCGTCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCTGAGAGGTCAAGCGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATCGATGGCCAATTGCTTGAAGTTGTTCTTGCCAAGCCGCAAACTGAAAAAAAACCTGATGGAGGTTATGCTCACAATCCTGGACTTTATCCAAACCATCTCCCACAACCTGGTTATGGTAACTTTTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTACTGCTAGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGCATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGCTACCCGACCTCGCAGAAATGACCGGAGCAATGGTCCAAGCGGTCAGTCAGGGCGAGGAGGCAGTGGTAATGATGAAGGCAATCGTAATAGAAGTGGACAAGCTTGGTTCTGCGACAACAAAAGAATCCTTCAGAAATTCACCACCTCCCAAATGCACTCACTCCCAATATCCCATCCTTGCTTACGTGGTTCTATTGGTGAAACCGTGAAAGAACGTTGCCGGAAATCGGAATCTGCAGTGGCGAGGCAAAGAAGGGAGACATAA | 1599 | 0.4353 | MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENVEGSVEEHEYEESAAEAGGKDQLPEAEKSDIATEFVEDEQKASLIDEDEKEKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQRAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDEFRNVIEGVGPGVENIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENITTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQLLEVVLAKPQTEKKPDGGYAHNPGLYPNHLPQPGYGNFSGNLYGSVGAGYGVTASYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPATRPRRNDRSNGPSGQSGRGGSGNDEGNRNRSGQAWFCDNKRILQKFTTSQMHSLPISHPCLRGSIGETVKERCRKSESAVARQRRET. | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca2g05617 | 532 | MobiDBLite | consensus disorder prediction | 448 | 477 | - | - | |
| Seca2g05617 | 532 | Gene3D | - | 10 | 186 | IPR012677 | - | |
| Seca2g05617 | 532 | MobiDBLite | consensus disorder prediction | 8 | 48 | - | - | |
| Seca2g05617 | 532 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | SMART | rrm1_1 | 282 | 354 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | SMART | rrm1_1 | 187 | 264 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Seca2g05617 | 532 | SUPERFAMILY | RNA-binding domain, RBD | 275 | 373 | IPR035979 | GO:0003676 | |
| Seca2g05617 | 532 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 186 | 268 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 8 | 186 | - | - | |
| Seca2g05617 | 532 | SUPERFAMILY | RNA-binding domain, RBD | 103 | 270 | IPR035979 | GO:0003676 | |
| Seca2g05617 | 532 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 178 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 188 | 254 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 283 | 351 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 12 | 471 | - | - | |
| Seca2g05617 | 532 | CDD | RRM_SF | 108 | 180 | - | - | |
| Seca2g05617 | 532 | MobiDBLite | consensus disorder prediction | 440 | 477 | - | - | |
| Seca2g05617 | 532 | Gene3D | - | 187 | 267 | IPR012677 | - | |
| Seca2g05617 | 532 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 281 | 358 | IPR000504 | GO:0003723 | |
| Seca2g05617 | 532 | MobiDBLite | consensus disorder prediction | 49 | 76 | - | - | |
| Seca2g05617 | 532 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 187 | 267 | - | - | |
| Seca2g05617 | 532 | Gene3D | - | 269 | 389 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca2g05617 | Seca-Chr2 | 142456636 | 142462740 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca2g05617 | 108 | 434 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.916 | 2.46e-17 | 83.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca2g05617 | K13161 | - | gmx:100800974 | 783.867 |